3ZCJ | pdb_00003zcj

Crystal structure of Helicobacter pylori T4SS protein CagL in a tetragonal crystal form with a helical RGD-motif (6 Mol per ASU)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	EUF08123	e3zcjF1	A: alpha bundles	X: Spectrin repeat-like	H: T4SS protein CagL (From Topology)	T: T4SS protein CagL	F: EUF08123	ECOD (1.6)
E	EUF08123	e3zcjE1	A: alpha bundles	X: Spectrin repeat-like	H: T4SS protein CagL (From Topology)	T: T4SS protein CagL	F: EUF08123	ECOD (1.6)
D	EUF08123	e3zcjD1	A: alpha bundles	X: Spectrin repeat-like	H: T4SS protein CagL (From Topology)	T: T4SS protein CagL	F: EUF08123	ECOD (1.6)
C	EUF08123	e3zcjC1	A: alpha bundles	X: Spectrin repeat-like	H: T4SS protein CagL (From Topology)	T: T4SS protein CagL	F: EUF08123	ECOD (1.6)
B	EUF08123	e3zcjB1	A: alpha bundles	X: Spectrin repeat-like	H: T4SS protein CagL (From Topology)	T: T4SS protein CagL	F: EUF08123	ECOD (1.6)
A	EUF08123	e3zcjA1	A: alpha bundles	X: Spectrin repeat-like	H: T4SS protein CagL (From Topology)	T: T4SS protein CagL	F: EUF08123	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	1.20.58.1660	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
E	1.20.58.1660	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
D	1.20.58.1660	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
C	1.20.58.1660	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
B	1.20.58.1660	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
A	1.20.58.1660	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF22450	T4SS protein CagL (CagL)	T4SS protein CagL	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR054370	T4SS protein CagL-like	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D, E A, B, C, D, E, F	MLY	Parent Component: LYS RESID: AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.