4CJ1 | pdb_00004cj1

Crystal structure of CelD in complex with affitin H3

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Chromo domain-like	8034344	3000161	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Six-hairpin glycosidases	8038377	3000970	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	E set domains	8054895	3000070	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	7kD_DNA_binding	e4cj1B1	A: beta barrels	X: SH3	H: Chromo domain-like (From Topology)	T: Chromo domain-like	F: 7kD_DNA_binding	ECOD (1.6)
A	CelD_N	e4cj1A2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CelD_N	ECOD (1.6)
A	Glyco_hydro_9	e4cj1A1	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Glyco_hydro_9	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF02294	7kD DNA-binding domain (7kD_DNA_binding)	7kD DNA-binding domain	This family contains members of the hyper-thermophilic archaebacterium 7kD DNA-binding/endoribonuclease P2 family. There are five 7kD DNA-binding proteins, 7a-7e, found as monomers in the cell. Protein 7e shows the tightest DNA-binding ability.	Domain
A	PF00759	Glycosyl hydrolase family 9 (Glyco_hydro_9)	Glycosyl hydrolase family 9	-	Repeat
A	PF02927	Cellulase N-terminal ig-like domain (CelD_N)	Cellulase N-terminal ig-like domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	H3 AFFITIN	DNA binding binding nucleic acid binding endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm
A	ENDOGLUCANASE D	hydrolase activity, acting on glycosyl bonds cellulase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellular process cellulose catabolic process carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellular process cellulose catabolic process macromolecule metabolic process cellulose metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR016197	Chromo-like domain superfamily	Homologous Superfamily
B	IPR003212	DNA-binding protein 7a-e	Family
A	IPR002105	Dockerin type I repeat	Repeat
A	IPR016134	Dockerin domain	Domain
A	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A	IPR008928	Six-hairpin glycosidase superfamily	Homologous Superfamily
A	IPR012341	Six-hairpin glycosidase-like superfamily	Homologous Superfamily
A	IPR018221	Glycoside hydrolase family 9, His active site	Active Site
A	IPR033126	Glycosyl hydrolases family 9, Asp/Glu active sites	Active Site
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A	IPR001701	Glycoside hydrolase family 9	Domain
A	IPR036439	Dockerin domain superfamily	Homologous Superfamily
A	IPR004197	Cellulase, Ig-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.