4EE7 | pdb_00004ee7

Crystal Structure of the Novel Phenazine Prenyltransferase EpzP in complex with S-thiolodiphosphate (methylated)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4ee7b_	Alpha and beta proteins (a+b)	Antiparallel beta/alpha barrel (PT-barrel)	Prenyltransferase-like	automated matches	automated matches	(Streptomyces virginiae ) [TaxId: 1961 ],	SCOPe (2.08)
A	d4ee7a_	Alpha and beta proteins (a+b)	Antiparallel beta/alpha barrel (PT-barrel)	Prenyltransferase-like	automated matches	automated matches	(Streptomyces virginiae ) [TaxId: 1961 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Prenyltransferase-like	8053372	3001496	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Prenyltransferase-like	8053372	3001496	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PTase_Orf2	e4ee7B1	A: a+b duplicates or obligate multimers	X: Prenyltransferase-like (From Topology)	H: Prenyltransferase-like (From Topology)	T: Prenyltransferase-like	F: PTase_Orf2	ECOD (1.6)
A	PTase_Orf2	e4ee7A1	A: a+b duplicates or obligate multimers	X: Prenyltransferase-like (From Topology)	H: Prenyltransferase-like (From Topology)	T: Prenyltransferase-like	F: PTase_Orf2	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF11468	Aromatic prenyltransferase Orf2 (PTase_Orf2)	Aromatic prenyltransferase Orf2	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Prenyltransferase	prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036239	Prenyltransferase-like superfamily	Homologous Superfamily
A, B	IPR033964	Aromatic prenyltransferase	Family
A, B	IPR020965	Aromatic prenyltransferase, CloQ-type	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B	MLY	Parent Component: LYS RESID: AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.