4IGI | pdb_00004igi

Crystal structure of the Collagen VI alpha3 N5 domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4igia_	Alpha and beta proteins (a/b)	vWA-like	vWA-like	automated matches	automated matches	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UNK_F_TYPE	e4igiA1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: vWA-like	F: UNK_F_TYPE	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.410	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	von Willebrand factor, type A domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00092	von Willebrand factor type A domain (VWA)	von Willebrand factor type A domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Collagen alpha3(VI)	enzyme regulator activity molecular function inhibitor activity peptidase regulator activity serine-type endopeptidase inhibitor activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity	neuron apoptotic process cellular process apoptotic process cell death programmed cell death response to light stimulus response to stimulus response to radiation response to abiotic stimulus response to UV cellular response to stimulus regulation of biological process regulation of cellular process signaling neuron apoptotic process cellular process apoptotic process cell death programmed cell death response to light stimulus response to stimulus response to radiation response to abiotic stimulus response to UV cellular response to stimulus regulation of biological process regulation of cellular process signaling biological regulation intracellular signal transduction cell communication intracellular signaling cassette signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction cell adhesion	protein-containing complex collagen trimer basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure sarcolemma plasma membrane membrane collagen beaded filament basement membrane/interstitial matrix interface von-Willerbrand-factor-A-domain-rich collagen trimer complex of collagen trimers protein-containing complex collagen trimer basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure sarcolemma plasma membrane membrane collagen beaded filament basement membrane/interstitial matrix interface von-Willerbrand-factor-A-domain-rich collagen trimer complex of collagen trimers supramolecular fiber supramolecular polymer supramolecular complex collagen type VI trimer extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008160	Collagen triple helix repeat	Repeat
A	IPR003961	Fibronectin type III	Domain
A	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
A	IPR020901	Proteinase inhibitor I2, Kunitz, conserved site	Conserved Site
A	IPR036880	Pancreatic trypsin inhibitor Kunitz domain superfamily	Homologous Superfamily
A	IPR002223	Pancreatic trypsin inhibitor Kunitz domain	Domain
A	IPR050525	Extracellular Matrix Assembly and Organization	Family
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR002035	von Willebrand factor, type A	Domain
A	IPR041900	Collagen alpha-3(VI) chain, vWA domain	Domain
A	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.