4JQ5 | pdb_00004jq5

Crystal structure of the human Nup49CCS2+3* coiled-coil segment

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Nup58-like	8053256	3002169	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Nup58-like	8053256	3002169	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Nup58-like	8053256	3002169	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Nup58-like	8053256	3002169	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Nup58-like	8053256	3002169	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Nup58-like	8053256	3002169	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Nup58-like	8053256	3002169	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nup58-like	8053256	3002169	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Nup58-like	8053256	3002169	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nup58-like	8053256	3002169	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nup58-like	8053256	3002169	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Nup58-like	8053256	3002169	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Nucleoporin_FG2	e4jq5L1	A: alpha bundles	X: Nucleoporin p58/p45 helical region (From Topology)	H: Nucleoporin p58/p45 helical region (From Topology)	T: Nucleoporin p58/p45 helical region	F: Nucleoporin_FG2	ECOD (1.6)
K	Nucleoporin_FG2	e4jq5K1	A: alpha bundles	X: Nucleoporin p58/p45 helical region (From Topology)	H: Nucleoporin p58/p45 helical region (From Topology)	T: Nucleoporin p58/p45 helical region	F: Nucleoporin_FG2	ECOD (1.6)
J	Nucleoporin_FG2	e4jq5J1	A: alpha bundles	X: Nucleoporin p58/p45 helical region (From Topology)	H: Nucleoporin p58/p45 helical region (From Topology)	T: Nucleoporin p58/p45 helical region	F: Nucleoporin_FG2	ECOD (1.6)
I	Nucleoporin_FG2	e4jq5I1	A: alpha bundles	X: Nucleoporin p58/p45 helical region (From Topology)	H: Nucleoporin p58/p45 helical region (From Topology)	T: Nucleoporin p58/p45 helical region	F: Nucleoporin_FG2	ECOD (1.6)
H	Nucleoporin_FG2	e4jq5H1	A: alpha bundles	X: Nucleoporin p58/p45 helical region (From Topology)	H: Nucleoporin p58/p45 helical region (From Topology)	T: Nucleoporin p58/p45 helical region	F: Nucleoporin_FG2	ECOD (1.6)
G	Nucleoporin_FG2	e4jq5G1	A: alpha bundles	X: Nucleoporin p58/p45 helical region (From Topology)	H: Nucleoporin p58/p45 helical region (From Topology)	T: Nucleoporin p58/p45 helical region	F: Nucleoporin_FG2	ECOD (1.6)
F	Nucleoporin_FG2	e4jq5F1	A: alpha bundles	X: Nucleoporin p58/p45 helical region (From Topology)	H: Nucleoporin p58/p45 helical region (From Topology)	T: Nucleoporin p58/p45 helical region	F: Nucleoporin_FG2	ECOD (1.6)
E	Nucleoporin_FG2	e4jq5E1	A: alpha bundles	X: Nucleoporin p58/p45 helical region (From Topology)	H: Nucleoporin p58/p45 helical region (From Topology)	T: Nucleoporin p58/p45 helical region	F: Nucleoporin_FG2	ECOD (1.6)
D	Nucleoporin_FG2	e4jq5D1	A: alpha bundles	X: Nucleoporin p58/p45 helical region (From Topology)	H: Nucleoporin p58/p45 helical region (From Topology)	T: Nucleoporin p58/p45 helical region	F: Nucleoporin_FG2	ECOD (1.6)
C	Nucleoporin_FG2	e4jq5C1	A: alpha bundles	X: Nucleoporin p58/p45 helical region (From Topology)	H: Nucleoporin p58/p45 helical region (From Topology)	T: Nucleoporin p58/p45 helical region	F: Nucleoporin_FG2	ECOD (1.6)
B	Nucleoporin_FG2	e4jq5B1	A: alpha bundles	X: Nucleoporin p58/p45 helical region (From Topology)	H: Nucleoporin p58/p45 helical region (From Topology)	T: Nucleoporin p58/p45 helical region	F: Nucleoporin_FG2	ECOD (1.6)
A	Nucleoporin_FG2	e4jq5A1	A: alpha bundles	X: Nucleoporin p58/p45 helical region (From Topology)	H: Nucleoporin p58/p45 helical region (From Topology)	T: Nucleoporin p58/p45 helical region	F: Nucleoporin_FG2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	6.10.140.1350	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
K	6.10.140.1350	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
J	6.10.140.1350	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
I	6.10.140.1350	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
H	6.10.140.1350	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
G	6.10.140.1350	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
F	6.10.140.1350	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
E	6.10.140.1350	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
D	6.10.140.1350	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
C	6.10.140.1350	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
B	6.10.140.1350	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
A	6.10.140.1350	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Nucleoporin p58/p45	protein-containing complex binding binding structural molecule activity structural constituent of nuclear pore identical protein binding protein binding nuclear localization sequence binding signal sequence binding peptide binding	localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport cellular process establishment of localization regulation of localization establishment of protein localization nitrogen compound transport regulation of cellular process regulation of protein localization localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport cellular process establishment of localization regulation of localization establishment of protein localization nitrogen compound transport regulation of cellular process regulation of protein localization regulation of protein localization to nucleus import into nucleus regulation of protein import into nucleus protein import into nucleus intracellular protein localization regulation of intracellular transport regulation of biological process regulation of transport biological regulation regulation of establishment of protein localization regulation of nucleocytoplasmic transport protein localization to nucleus regulation of protein transport establishment of protein localization to organelle protein transport regulation of cellular localization macromolecule localization protein localization to organelle regulation of intracellular protein transport intracellular protein transport RNA transport nucleic acid transport mRNA transport establishment of RNA localization RNA localization nucleobase-containing compound transport	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope nuclear pore nuclear membrane membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope nuclear pore nuclear membrane membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR024882	Nucleoporin p58/p45/NUP49	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Pharos: Q9BVL2	rheumatoid arthritis astrocytic tumor hepatocellular carcinoma malignant ependymoma nasopharyngeal carcinoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm pilocytic astrocytoma spina bifida atypical teratoid rhabdoid tumor large cell medulloblastoma malignant glioma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia rheumatoid arthritis astrocytic tumor hepatocellular carcinoma malignant ependymoma nasopharyngeal carcinoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm pilocytic astrocytoma spina bifida atypical teratoid rhabdoid tumor large cell medulloblastoma malignant glioma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor tuberculosis glioblastoma malignant colon neoplasm medulloblastoma oligodendroglioma pancreatic ductal adenocarcinoma Pick disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.