4V9E | pdb_00004v9e

Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer Bound to Single-stranded RNA.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth BE]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
Y [auth BD]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
X [auth BC]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
W [auth BB]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
V [auth BA]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
R [auth AR]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
Q [auth AQ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
P [auth AP]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
O [auth AO]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
N [auth AN]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
MA [auth BR]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
M [auth AM]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
LA [auth BQ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
L [auth AL]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
KA [auth BP]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
K [auth AK]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
JA [auth BO]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
J [auth AJ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
IA [auth BN]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
I [auth AI]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
HA [auth BM]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
H [auth AH]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
GA [auth BL]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
G [auth AG]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
FA [auth BK]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
F [auth AF]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
EA [auth BJ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
E [auth AE]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
DA [auth BI]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
D [auth AD]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
CA [auth BH]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
C [auth AC]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
BA [auth BG]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
B [auth AB]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
AA [auth BF]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
A [auth AA]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth BE]	Tenui_N	e4v9eBE1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
Y [auth BD]	Tenui_N	e4v9eBD1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
X [auth BC]	Tenui_N	e4v9eBC1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
W [auth BB]	Tenui_N	e4v9eBB1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
V [auth BA]	Tenui_N	e4v9eBA1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
R [auth AR]	Tenui_N	e4v9eAR1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
Q [auth AQ]	Tenui_N	e4v9eAQ1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
P [auth AP]	Tenui_N	e4v9eAP1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
O [auth AO]	Tenui_N	e4v9eAO1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
N [auth AN]	Tenui_N	e4v9eAN1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
MA [auth BR]	Tenui_N	e4v9eBR1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
M [auth AM]	Tenui_N	e4v9eAM1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
LA [auth BQ]	Tenui_N	e4v9eBQ1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
L [auth AL]	Tenui_N	e4v9eAL1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
KA [auth BP]	Tenui_N	e4v9eBP1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
K [auth AK]	Tenui_N	e4v9eAK1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
JA [auth BO]	Tenui_N	e4v9eBO1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
J [auth AJ]	Tenui_N	e4v9eAJ1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
IA [auth BN]	Tenui_N	e4v9eBN1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
I [auth AI]	Tenui_N	e4v9eAI1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
HA [auth BM]	Tenui_N	e4v9eBM1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
H [auth AH]	Tenui_N	e4v9eAH1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
GA [auth BL]	Tenui_N	e4v9eBL1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
G [auth AG]	Tenui_N	e4v9eAG1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
FA [auth BK]	Tenui_N	e4v9eBK1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
F [auth AF]	Tenui_N	e4v9eAF1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
EA [auth BJ]	Tenui_N	e4v9eBJ1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
E [auth AE]	Tenui_N	e4v9eAE1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
DA [auth BI]	Tenui_N	e4v9eBI1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
D [auth AD]	Tenui_N	e4v9eAD1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
CA [auth BH]	Tenui_N	e4v9eBH1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
C [auth AC]	Tenui_N	e4v9eAC1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
BA [auth BG]	Tenui_N	e4v9eBG1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
B [auth AB]	Tenui_N	e4v9eAB1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
AA [auth BF]	Tenui_N	e4v9eBF1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
A [auth AA]	Tenui_N	e4v9eAA1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
NA [auth Ba], OA [auth Bg], PA [auth Bm], S [auth Aa], T [auth Ag], NA [auth Ba], OA [auth Bg], PA [auth Bm], S [auth Aa], T [auth Ag], U [auth Am]	35-mer poly(U) RNA	-	-	-
A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], CA [auth BH], D [auth AD], DA [auth BI], E [auth AE], EA [auth BJ], F [auth AF], FA [auth BK], G [auth AG], GA [auth BL], H [auth AH], HA [auth BM], I [auth AI], IA [auth BN], J [auth AJ], JA [auth BO], K [auth AK], KA [auth BP], L [auth AL], LA [auth BQ], M [auth AM], MA [auth BR], N [auth AN], O [auth AO], P [auth AP], Q [auth AQ], R [auth AR], V [auth BA], W [auth BB], X [auth BC], Y [auth BD], Z [auth BE]	Nucleocapsid protein	RNA binding binding nucleic acid binding identical protein binding protein binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], CA [auth BH], D [auth AD], DA [auth BI], E [auth AE], EA [auth BJ], F [auth AF], FA [auth BK], G [auth AG], GA [auth BL], H [auth AH], HA [auth BM], I [auth AI], IA [auth BN], J [auth AJ], JA [auth BO], K [auth AK], KA [auth BP], L [auth AL], LA [auth BQ], M [auth AM], MA [auth BR], N [auth AN], O [auth AO], P [auth AP], Q [auth AQ], R [auth AR], V [auth BA], W [auth BB], X [auth BC], Y [auth BD], Z [auth BE]	IPR015971	Nucleocapsid, Phlebovirus	Family
A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], CA [auth BH], D [auth AD], DA [auth BI], E [auth AE], EA [auth BJ], F [auth AF], FA [auth BK], G [auth AG], GA [auth BL], H [auth AH], HA [auth BM], I [auth AI], IA [auth BN], J [auth AJ], JA [auth BO], K [auth AK], KA [auth BP], L [auth AL], LA [auth BQ], M [auth AM], MA [auth BR], N [auth AN], O [auth AO], P [auth AP], Q [auth AQ], R [auth AR], V [auth BA], W [auth BB], X [auth BC], Y [auth BD], Z [auth BE]	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family