Crystal structure of the HypAB-Ni complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2 Family | FlhG-like | 8045215 | 4003984 | SCOP2 (2022-06-29) |
| B | SCOP2 Superfamily | Simibi-like P-loop NTPases | 8057058 | 3002018 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | HypA-like | 8048619 | 4006166 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | HypA-like | 8057059 | 3002385 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | AAA_31 | e5aunB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_31 | ECOD (1.6) |
| A | HypA | e5aunA2 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: HypA Ni-binding domain (From Topology) | T: HypA Ni-binding domain | F: HypA | ECOD (1.6) |
| A | HypA_1 | e5aunA1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: HypA_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
| A | 3.30.2320.50 | Alpha Beta | 2-Layer Sandwich | hypothetical protein PF0899 fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF10609 | NUBPL iron-transfer P-loop NTPase (ParA) | NUBPL iron-transfer P-loop NTPase | - | Family | |
| PF01155 | Hydrogenase/urease nickel incorporation, metallochaperone, hypA (HypA) | Hydrogenase/urease nickel incorporation, metallochaperone, hypA | HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cy ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR033756 | Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 | Family | |
| IPR019591 | Mrp/NBP35 ATP-binding protein | Family | |
| IPR044304 | Iron-sulfur protein NUBPL-like | Family | |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
| IPR020538 | Hydrogenase nickel incorporation protein HypA/HybF, conserved site | Conserved Site | |
| IPR000688 | Hydrogenase maturation factor HypA/HybF | Family |














