5EPA | pdb_00005epa

Crystal structure of non-heme alpha ketoglutarate dependent carbocyclase SnoK from nogalamycin biosynthesis

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APhyHe5epaA1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: PhyHECOD (1.6)
BPhyHe5epaB1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: PhyHECOD (1.6)
CPhyHe5epaC1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: PhyHECOD (1.6)
DPhyHe5epaD1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: PhyHECOD (1.6)
EPhyHe5epaE1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: PhyHECOD (1.6)
FPhyHe5epaF1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: PhyHECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.620 Mainly Beta Sandwich Jelly Rolls q2cbj1_9rhob like domainCATH (4.3.0)
B2.60.120.620 Mainly Beta Sandwich Jelly Rolls q2cbj1_9rhob like domainCATH (4.3.0)
C2.60.120.620 Mainly Beta Sandwich Jelly Rolls q2cbj1_9rhob like domainCATH (4.3.0)
D2.60.120.620 Mainly Beta Sandwich Jelly Rolls q2cbj1_9rhob like domainCATH (4.3.0)
E2.60.120.620 Mainly Beta Sandwich Jelly Rolls q2cbj1_9rhob like domainCATH (4.3.0)
F2.60.120.620 Mainly Beta Sandwich Jelly Rolls q2cbj1_9rhob like domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF05721Phytanoyl-CoA dioxygenase (PhyH) (PhyH)Phytanoyl-CoA dioxygenase (PhyH)This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins, ectoine hydroxylases and a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficie ...This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins, ectoine hydroxylases and a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
SnoK - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR008775Phytanoyl-CoA dioxygenase-likeFamily