5IGO | pdb_00005igo

WD40 domain of Arabidopsis thaliana E3 Ubiquitin Ligase COP1 in complex with peptide from Trib1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth D]	ANAPC4_WD40_8	e5igoD1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_8	ECOD (1.6)
E [auth C]	ANAPC4_WD40_8	e5igoC1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_8	ECOD (1.6)
C [auth B]	ANAPC4_WD40_8	e5igoB1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_8	ECOD (1.6)
A	ANAPC4_WD40_8	e5igoA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_8	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G [auth D]	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
E [auth C]	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
C [auth B]	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
A	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B], E [auth C], G [auth D]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth U], D [auth V], F [auth W], H [auth X]	Tribbles homolog 1	enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase regulator activity kinase inhibitor activity kinase regulator activity transcription regulator inhibitor activity protein binding binding kinase binding enzyme binding protein kinase binding enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase regulator activity kinase inhibitor activity kinase regulator activity transcription regulator inhibitor activity protein binding binding kinase binding enzyme binding protein kinase binding mitogen-activated protein kinase kinase binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding ubiquitin-protein transferase regulator activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding	negative regulation of locomotion regulation of biological process regulation of cell motility regulation of cellular process regulation of smooth muscle cell migration biological regulation negative regulation of biological process smooth muscle cell migration muscle cell migration negative regulation of smooth muscle cell migration regulation of locomotion regulation of cell migration negative regulation of cellular process negative regulation of cell motility negative regulation of locomotion regulation of biological process regulation of cell motility regulation of cellular process regulation of smooth muscle cell migration biological regulation negative regulation of biological process smooth muscle cell migration muscle cell migration negative regulation of smooth muscle cell migration regulation of locomotion regulation of cell migration negative regulation of cellular process negative regulation of cell motility cell migration cellular process cell motility locomotion negative regulation of cell migration negative regulation of cell population proliferation cell population proliferation regulation of smooth muscle cell proliferation smooth muscle cell proliferation negative regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation positive regulation of proteasomal protein catabolic process catabolic process positive regulation of protein metabolic process proteolysis involved in protein catabolic process positive regulation of biological process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of ubiquitin-dependent protein catabolic process regulation of proteolysis regulation of proteolysis involved in protein catabolic process modification-dependent macromolecule catabolic process proteolysis positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of protein metabolic process primary metabolic process proteasomal protein catabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of proteolysis involved in protein catabolic process positive regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process positive regulation of proteolysis regulation of proteasomal protein catabolic process positive regulation of proteasomal ubiquitin-dependent protein catabolic process metabolic process ubiquitin-dependent protein catabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process cellular response to stimulus response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction regulation of signal transduction intracellular signal transduction negative regulation of cell communication cell communication negative regulation of JNK cascade regulation of intracellular signal transduction JNK cascade intracellular signaling cassette signal transduction regulation of signaling negative regulation of response to stimulus regulation of JNK cascade regulation of MAPK cascade negative regulation of signal transduction regulation of response to stimulus MAPK cascade regulation of cell communication negative regulation of MAPK cascade multicellular organismal process myeloid leukocyte differentiation regulation of leukocyte differentiation regulation of granulocyte differentiation cellular developmental process regulation of developmental process regulation of eosinophil differentiation cell development regulation of cell differentiation regulation of cell development positive regulation of developmental process multicellular organism development positive regulation of cell differentiation positive regulation of hemopoiesis cell differentiation anatomical structure development regulation of immune system process regulation of multicellular organismal process positive regulation of immune system process developmental process regulation of multicellular organismal development hemopoiesis regulation of myeloid cell differentiation positive regulation of cell development regulation of myeloid leukocyte differentiation positive regulation of myeloid leukocyte differentiation eosinophil differentiation myeloid cell differentiation granulocyte differentiation immune system process positive regulation of myeloid cell differentiation regulation of hemopoiesis positive regulation of multicellular organismal process positive regulation of eosinophil differentiation positive regulation of granulocyte differentiation positive regulation of leukocyte differentiation leukocyte differentiation regulation of protein modification process regulation of catalytic activity regulation of protein phosphorylation regulation of transferase activity regulation of MAP kinase activity phosphate-containing compound metabolic process phosphorus metabolic process protein modification process protein phosphorylation phosphorylation regulation of protein kinase activity regulation of molecular function regulation of kinase activity regulation of protein serine/threonine kinase activity macromolecule modification regulation of phosphorylation regulation of phosphorus metabolic process regulation of lipopolysaccharide-mediated signaling pathway negative regulation of lipopolysaccharide-mediated signaling pathway regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms negative regulation of response to biotic stimulus regulation of response to external stimulus response to lipid cellular response to lipopolysaccharide response to biotic stimulus lipopolysaccharide-mediated signaling pathway cellular response to biotic stimulus response to bacterium response to external biotic stimulus cell surface receptor signaling pathway response to other organism response to oxygen-containing compound response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound cellular response to chemical stimulus negative regulation of response to external stimulus response to chemical cellular response to lipid response to molecule of bacterial origin regulation of neutrophil differentiation negative regulation of neutrophil differentiation negative regulation of cell differentiation negative regulation of hemopoiesis negative regulation of leukocyte differentiation negative regulation of developmental process negative regulation of myeloid cell differentiation negative regulation of myeloid leukocyte differentiation negative regulation of cell development negative regulation of granulocyte differentiation negative regulation of immune system process neutrophil differentiation negative regulation of multicellular organismal process mononuclear cell differentiation regulation of macrophage differentiation macrophage differentiation positive regulation of macrophage differentiation RNA metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
A, C [auth B], E [auth C], G [auth D]	E3 ubiquitin-protein ligase COP1	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding transition metal ion binding zinc ion binding ion binding binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding identical protein binding protein binding	response to light stimulus response to stimulus shade avoidance response to radiation response to abiotic stimulus response to red or far red light regulation of stomatal movement regulation of biological process regulation of cellular process stomatal movement biological regulation cellular process cellular response to stimulus cellular response to red or far red light response to light stimulus response to stimulus shade avoidance response to radiation response to abiotic stimulus response to red or far red light regulation of stomatal movement regulation of biological process regulation of cellular process stomatal movement biological regulation cellular process cellular response to stimulus cellular response to red or far red light signaling detection of abiotic stimulus cell communication cellular response to environmental stimulus cellular response to light stimulus signal transduction phototransduction detection of light stimulus detection of external stimulus red or far-red light signaling pathway response to external stimulus cellular response to radiation detection of stimulus red, far-red light phototransduction cellular response to abiotic stimulus rhythmic process entrainment of circadian clock circadian rhythm regulation of circadian rhythm developmental process multicellular organismal process multicellular organism development photomorphogenesis anatomical structure development post-embryonic development response to UV response to UV-B primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal regulation of biosynthetic process flavonoid metabolic process positive regulation of biological process regulation of primary metabolic process positive regulation of metabolic process regulation of flavonoid biosynthetic process biosynthetic process flavonoid biosynthetic process positive regulation of biosynthetic process positive regulation of flavonoid biosynthetic process regulation of metabolic process positive regulation of cellular process pigment metabolic process anthocyanin-containing compound metabolic process photoperiodism, flowering reproductive system development reproductive process vegetative to reproductive phase transition of meristem developmental process involved in reproduction photoperiodism reproductive structure development system development response to light intensity response to absence of light skotomorphogenesis DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress DNA repair	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle nucleoplasm organelle lumen organelle cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle nucleoplasm organelle lumen organelle membraneless organelle nuclear lumen protein-containing complex ubiquitin ligase complex catalytic complex nuclear protein-containing complex transferase complex nuclear ubiquitin ligase complex intracellular protein-containing complex cullin-RING ubiquitin ligase complex Cul4-RING E3 ubiquitin ligase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth U], D [auth V], F [auth W], H [auth X]	IPR024105	Tribbles homologue 1, pseudokinase domain	Domain
B [auth U], D [auth V], F [auth W], H [auth X]	IPR024104	Pseudokinase tribbles family/serine-threonine-protein kinase 40	Family
B [auth U], D [auth V], F [auth W], H [auth X]	IPR000719	Protein kinase domain	Domain
B [auth U], D [auth V], F [auth W], H [auth X]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D]	IPR019775	WD40 repeat, conserved site	Conserved Site
A, C [auth B], E [auth C], G [auth D]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D]	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
A, C [auth B], E [auth C], G [auth D]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D]	IPR042755	E3 ubiquitin-protein ligase COP1	Family
A, C [auth B], E [auth C], G [auth D]	IPR001680	WD40 repeat	Repeat
A, C [auth B], E [auth C], G [auth D]	IPR001841	Zinc finger, RING-type	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth U], D [auth V], F [auth W], H [auth X]	Pharos: Q96RU8	coronary artery disease non-alcoholic fatty liver disease lung cancer MALT lymphoma myocardial infarction non-small cell lung carcinoma polycystic ovary syndrome abdominal aortic aneurysm ulcerative colitis adrenal cortex carcinoma Barrett esophagus Coronary Arteriosclerosis dermatomyositis heart disease interstitial lung disease coronary artery disease non-alcoholic fatty liver disease lung cancer MALT lymphoma myocardial infarction non-small cell lung carcinoma polycystic ovary syndrome abdominal aortic aneurysm ulcerative colitis adrenal cortex carcinoma Barrett esophagus Coronary Arteriosclerosis dermatomyositis heart disease interstitial lung disease lung large cell carcinoma metabolic disease nephrosclerosis osteosarcoma rheumatoid arthritis adenoma astrocytic tumor breast cancer esophageal adenocarcinoma inflammatory bowel disease large cell medulloblastoma lymphoplasmacytic lymphoma metabolic syndrome X ovarian cancer sinusitis adrenal cortex adenoma B-cell chronic lymphocytic leukemia congestive heart failure Crohn disease glioblastoma interstitial cystitis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.