5IJ8 | pdb_00005ij8

Structure of the primary oncogenic mutant Y641N Hs/AcPRC2 in complex with a pyridone inhibitor


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth T]SCOP2B SuperfamilyVEFS box-like 8090819 3002459 SCOP2B (2022-06-29)
E [auth S]SCOP2B SuperfamilyVEFS box-like 8090819 3002459 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth T]VEFS-Boxe5ij8T1 A: alpha arraysX: lambda integrase-N-likeH: VEFS domain (From Topology)T: VEFS domainF: VEFS-BoxECOD (1.6)
E [auth S]VEFS-Boxe5ij8S1 A: alpha arraysX: lambda integrase-N-likeH: VEFS domain (From Topology)T: VEFS domainF: VEFS-BoxECOD (1.6)
D [auth F]ANAPC4_WD40_5e5ij8F1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_5ECOD (1.6)
C [auth E]ANAPC4_WD40_5e5ij8E1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_5ECOD (1.6)
BSETe5ij8B7 A: beta barrelsX: beta-clipH: SET domain-like (From Topology)T: SET domain-likeF: SETECOD (1.6)
BKOG1079_1ste5ij8B1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: KOG1079_1stECOD (1.6)
BMyb_DNA-binding_3e5ij8B8 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Myb_DNA-binding_3ECOD (1.6)
BKOG1079_4the5ij8B2 A: few secondary structure elementsX: Zn3Cys9 preSET domain-related (From Topology)H: Zn3Cys9 preSET domain-related (From Topology)T: Zn3Cys9 preSET domain-relatedF: KOG1079_4thECOD (1.6)
BKOG1079_3rde5ij8B6 A: few secondary structure elementsX: Zn3Cys9 preSET domain-related (From Topology)H: Zn3Cys9 preSET domain-related (From Topology)T: Zn3Cys9 preSET domain-relatedF: KOG1079_3rdECOD (1.6)
BKOG1079_2nde5ij8B5 A: few secondary structure elementsX: Ezh2 MCSS domain (From Topology)H: Ezh2 MCSS domain (From Topology)T: Ezh2 MCSS domainF: KOG1079_2ndECOD (1.6)
BEZH2_WD-Bindinge5ij8B3 A: extended segmentsX: Ezh2 N-terminal domain (From Topology)H: Ezh2 N-terminal domain (From Topology)T: Ezh2 N-terminal domainF: EZH2_WD-BindingECOD (1.6)
ASETe5ij8A1 A: beta barrelsX: beta-clipH: SET domain-like (From Topology)T: SET domain-likeF: SETECOD (1.6)
AKOG1079_1ste5ij8A4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: KOG1079_1stECOD (1.6)
AMyb_DNA-binding_3e5ij8A8 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Myb_DNA-binding_3ECOD (1.6)
AKOG1079_4the5ij8A2 A: few secondary structure elementsX: Zn3Cys9 preSET domain-related (From Topology)H: Zn3Cys9 preSET domain-related (From Topology)T: Zn3Cys9 preSET domain-relatedF: KOG1079_4thECOD (1.6)
AKOG1079_3rde5ij8A5 A: few secondary structure elementsX: Zn3Cys9 preSET domain-related (From Topology)H: Zn3Cys9 preSET domain-related (From Topology)T: Zn3Cys9 preSET domain-relatedF: KOG1079_3rdECOD (1.6)
AKOG1079_2nde5ij8A3 A: few secondary structure elementsX: Ezh2 MCSS domain (From Topology)H: Ezh2 MCSS domain (From Topology)T: Ezh2 MCSS domainF: KOG1079_2ndECOD (1.6)
AEZH2_WD-Bindinge5ij8A7 A: extended segmentsX: Ezh2 N-terminal domain (From Topology)H: Ezh2 N-terminal domain (From Topology)T: Ezh2 N-terminal domainF: EZH2_WD-BindingECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth F]2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
C [auth E]2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth E],
D [auth F]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
A, B
PF18264CXC domain (preSET_CXC)CXC domainThis domain is found to the N-terminus of the SET domain in the EZH2 protein [1]. It is a zinc binding domain. Domain
A, B
PF00856SET domain (SET)SET domain- Family
A, B
PF11616WD repeat binding protein EZH2 (EZH2_WD-Binding)WD repeat binding protein EZH2- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth S],
F [auth T]
Polycomb protein SUZ12
C [auth E],
D [auth F]
Polycomb protein EED
A, B
Enhancer of Zeste Homolog 2 (EZH2),Histone-lysine N-methyltransferase EZH2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth S],
F [auth T]
IPR019135Polycomb protein, VEFS-BoxDomain
C [auth E],
D [auth F]
IPR019775WD40 repeat, conserved siteConserved Site
C [auth E],
D [auth F]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
C [auth E],
D [auth F]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C [auth E],
D [auth F]
IPR001680WD40 repeatRepeat
C [auth E],
D [auth F]
IPR051243Polycomb group WD repeat-containing proteinFamily
A, B
IPR048358EZH1/2, MCSS domainDomain
A, B
IPR041343Polycomb repressive complex 2 subunit EZH1/EZH2, tri-helical domainDomain
A, B
IPR046341SET domain superfamilyHomologous Superfamily
A, B
IPR033467Tesmin/TSO1-like CXC domainDomain
A, B
IPR044439EZH2, SET domainDomain
A, B
IPR041355Pre-SET CXC domainDomain
A, B
IPR001214SET domainDomain
A, B
IPR001005SANT/Myb domainDomain
A, B
IPR045318Histone-lysine N-methyltransferase EZH1/2-likeFamily
A, B
IPR021654Histone-lysine N-methyltransferase EZH1/EZH2Family
A, B
IPR026489CXC domainDomain
A, B
IPR048358EZH1/2, MCSS domainDomain
A, B
IPR041343Polycomb repressive complex 2 subunit EZH1/EZH2, tri-helical domainDomain
A, B
IPR046341SET domain superfamilyHomologous Superfamily
A, B
IPR001214SET domainDomain
A, B
IPR045318Histone-lysine N-methyltransferase EZH1/2-likeFamily
A, B
IPR033467Tesmin/TSO1-like CXC domainDomain
A, B
IPR044439EZH2, SET domainDomain
A, B
IPR026489CXC domainDomain
A, B
IPR041355Pre-SET CXC domainDomain
A, B
IPR001005SANT/Myb domainDomain
A, B
IPR021654Histone-lysine N-methyltransferase EZH1/EZH2Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
E [auth S],
F [auth T]
PharosQ15022
C [auth E],
D [auth F]
PharosO75530
A, B
PharosQ15910