5J83 | pdb_00005j83

Crystal structure of L-arabinonate dehydratase in apo-form


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AILVD_EDD_1ste5j83A2 A: alpha arraysX: lvD/EDD N-terminal domain-like (From Topology)H: lvD/EDD N-terminal domain-like (From Topology)T: lvD/EDD N-terminal domain-likeF: ILVD_EDD_1stECOD (1.6)
AILVD_EDD_2nde5j83A1 A: a/b three-layered sandwichesX: The swivelling beta/beta/alpha domainsH: The swivelling beta/beta/alpha domain (From Topology)T: The swivelling beta/beta/alpha domainF: ILVD_EDD_2ndECOD (1.6)
BILVD_EDD_1ste5j83B1 A: alpha arraysX: lvD/EDD N-terminal domain-like (From Topology)H: lvD/EDD N-terminal domain-like (From Topology)T: lvD/EDD N-terminal domain-likeF: ILVD_EDD_1stECOD (1.6)
BILVD_EDD_2nde5j83B2 A: a/b three-layered sandwichesX: The swivelling beta/beta/alpha domainsH: The swivelling beta/beta/alpha domain (From Topology)T: The swivelling beta/beta/alpha domainF: ILVD_EDD_2ndECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.50.30.80 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase domain 1CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00920Dihydroxy-acid/6-phosphogluconate dehydratase N-terminal (ILVD_EDD_N)Dihydroxy-acid/6-phosphogluconate dehydratase N-terminalThis is the N-terminal domain of Ilv/ED dehydratase protein family which includes dihydroxy-acid/6-phosphogluconate dehydratases, and pentonate dehydratases [3]. Members of this entry are involved in various biosynthetic and carbohydrate metabolic pa ...This is the N-terminal domain of Ilv/ED dehydratase protein family which includes dihydroxy-acid/6-phosphogluconate dehydratases, and pentonate dehydratases [3]. Members of this entry are involved in various biosynthetic and carbohydrate metabolic pathways [2]. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydration of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydration of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. They consist of two domains, N- and C-terminal. This domain is composed of a beta-sheet with four parallel beta-strands surrounded by four alpha-helices and forms a binding site for a [2Fe-2S] cluster and a Mg2+ ion [1,2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Dihydroxyacid dehydratase/phosphogluconate dehydratase - -