5L38 | pdb_00005l38

The structure of the hexagonal shell protein MSM0272 from the RMM microcompartment

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d5l38l_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
K	d5l38k_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
J	d5l38j_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
I	d5l38i_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
H	d5l38h_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
G	d5l38g_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
F	d5l38f_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
E	d5l38e_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
D	d5l38d_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
C	d5l38c_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
B	d5l38b_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
A	d5l38a_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	CcmK-like	8081356	3001326	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	CcmK-like	8081356	3001326	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	CcmK-like	8081356	3001326	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	CcmK-like	8081356	3001326	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	CcmK-like	8081356	3001326	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	CcmK-like	8081356	3001326	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	CcmK-like	8081356	3001326	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CcmK-like	8081356	3001326	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CcmK-like	8081356	3001326	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CcmK-like	8081356	3001326	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CcmK-like	8081356	3001326	SCOP2B (2022-06-29)
A	SCOP2 Family	CcmK-like	8081355	4003707	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CcmK-like	8081356	3001326	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	BMC	e5l38L1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
K	BMC	e5l38K1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
J	BMC	e5l38J1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
I	BMC	e5l38I1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
H	BMC	e5l38H1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
G	BMC	e5l38G1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
F	BMC	e5l38F1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
E	BMC	e5l38E1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
D	BMC	e5l38D1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
C	BMC	e5l38C1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
B	BMC	e5l38B1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
A	BMC	e5l38A1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
K	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
J	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
I	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
H	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
G	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
F	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
E	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
D	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
C	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
B	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
A	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00936	BMC domain (BMC)	BMC domain	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	MSM0272 - RMM microcompartment shell protein	-	-	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000249	Bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050575	Bacterial microcompartment shell	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR044872	CcmK/CsoS1, bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR037233	CcmK-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.