5LI0 | pdb_00005li0

70S ribosome from Staphylococcus aureus


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth b]SCOP2 FamilyRibosomal protein S2-like 8099283 4003744 SCOP2 (2022-06-29)
B [auth b]SCOP2 SuperfamilySIS domain/Ribosomal protein S2-like 8099284 3001397 SCOP2 (2022-06-29)
F [auth f]SCOP2B SuperfamilyRibosomal protein S6 8066489 3001323 SCOP2B (2022-06-29)
G [auth g]SCOP2B SuperfamilyRibosomal protein S7 8066031 3000799 SCOP2B (2022-06-29)
H [auth h]SCOP2B SuperfamilyRibosomal protein S8 8079049 3000709 SCOP2B (2022-06-29)
I [auth i]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082669 3000100 SCOP2B (2022-06-29)
K [auth k]SCOP2 FamilyRibosomal protein L18p and S11 8099267 4000555 SCOP2 (2022-06-29)
K [auth k]SCOP2 SuperfamilyTranslational machinery components 8099268 3000571 SCOP2 (2022-06-29)
L [auth l]SCOP2 FamilyCold shock DNA-binding domain-like 8099593 4001909 SCOP2 (2022-06-29)
L [auth l]SCOP2 SuperfamilyNucleic acid-binding proteins 8099594 3000135 SCOP2 (2022-06-29)
O [auth o]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8072621 3001284 SCOP2B (2022-06-29)
P [auth p]SCOP2B SuperfamilyRibosomal protein S16 8066555 3000680 SCOP2B (2022-06-29)
X [auth E]SCOP2B SuperfamilyTranslational proteins 8089152 3000811 SCOP2B (2022-06-29)
Y [auth F]SCOP2B SuperfamilyRibosomal protein L4 8094174 3001146 SCOP2B (2022-06-29)
BA [auth M]SCOP2B SuperfamilyRibosomal protein L13 8066059 3001134 SCOP2B (2022-06-29)
DA [auth O]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070555 3001045 SCOP2B (2022-06-29)
EA [auth P]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8076041 3000884 SCOP2B (2022-06-29)
FA [auth Q]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8089022 3000995 SCOP2B (2022-06-29)
HA [auth S]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082423 3000334 SCOP2B (2022-06-29)
IA [auth T]SCOP2B SuperfamilyRibosomal protein L20 8094941 3000563 SCOP2B (2022-06-29)
KA [auth V]SCOP2B SuperfamilyRibosomal protein L22 8076726 3001078 SCOP2B (2022-06-29)
QA [auth 1]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8094170 3000713 SCOP2B (2022-06-29)
RA [auth 2]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8076281 3001378 SCOP2B (2022-06-29)
SA [auth 3]SCOP2B SuperfamilyL28p-like 8086138 3001966 SCOP2B (2022-06-29)
TA [auth 4]SCOP2 FamilyRibosomal protein L32p 8081582 4000508 SCOP2 (2022-06-29)
TA [auth 4]SCOP2 SuperfamilyZn-binding ribosomal proteins 8081583 3001320 SCOP2 (2022-06-29)
XA [auth 8]SCOP2B SuperfamilyRibosomal protein L36 8083312 3001346 SCOP2B (2022-06-29)
WA [auth 7]SCOP2B SuperfamilyL35p-like 8083334 3000790 SCOP2B (2022-06-29)
UA [auth 5]SCOP2 FamilyRibosomal protein L33p 8075067 4000511 SCOP2 (2022-06-29)
UA [auth 5]SCOP2 SuperfamilyZn-binding ribosomal proteins 8075068 3001320 SCOP2 (2022-06-29)
OA [auth Z]SCOP2 FamilyRibosomal L27 protein 8075029 4001900 SCOP2 (2022-06-29)
OA [auth Z]SCOP2 SuperfamilyRibosomal L27 protein-like 8075030 3000539 SCOP2 (2022-06-29)
D [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083392 3001473 SCOP2B (2022-06-29)
MA [auth X]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082503 3000334 SCOP2B (2022-06-29)
LA [auth W]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8086046 3000210 SCOP2B (2022-06-29)
JA [auth U]SCOP2B Superfamilyl21p-like 8094148 3002005 SCOP2B (2022-06-29)
CA [auth N]SCOP2B Superfamily50S Ribosomal protein L14-like 8093892 3000433 SCOP2B (2022-06-29)
S [auth s]SCOP2B SuperfamilyRibosomal protein S19 8086064 3000686 SCOP2B (2022-06-29)
Q [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins 8059272 3000135 SCOP2B (2022-06-29)
M [auth m]SCOP2 FamilyRibosomal protein S13 8099265 4000260 SCOP2 (2022-06-29)
M [auth m]SCOP2 SuperfamilyS13-like H2TH domain 8099266 3000053 SCOP2 (2022-06-29)
J [auth j]SCOP2 FamilyRibosomal protein S10 8100361 4001240 SCOP2 (2022-06-29)
J [auth j]SCOP2 SuperfamilyRibosomal protein S10 8100362 3001336 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth b]Ribosomal_S2e5li0b1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
E [auth e]Ribosomal_S5_Ce5li0e2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
E [auth e]Ribosomal_S5e5li0e1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
F [auth f]Ribosomal_S6e5li0f1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
G [auth g]Ribosomal_S7_1e5li0g1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
H [auth h]Ribosomal_S8_Ne5li0h1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
H [auth h]Ribosomal_S8_Ce5li0h2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
I [auth i]Ribosomal_S9e5li0i1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
K [auth k]Ribosomal_S11e5li0k1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
L [auth l]Ribosom_S12_S23e5li0l1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
O [auth o]Ribosomal_S15_1e5li0o1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
P [auth p]Ribosomal_S16_1e5li0p1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16_1ECOD (1.6)
R [auth r]Ribosomal_S18e5li0r1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
T [auth t]Ribosomal_S20pe5li0t1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
W [auth D]Ribosomal_L2_1e5li0D2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
W [auth D]Ribosomal_L2_Ce5li0D1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
X [auth E]Ribosomal_L3e5li0E1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
Y [auth F]Ribosomal_L4e5li0F1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
Z [auth G]Ribosomal_L5_Ce5li0G1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
BA [auth M]Ribosomal_L13e5li0M1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
DA [auth O]Ribosomal_L27Ae5li0O1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
EA [auth P]Ribosomal_L16e5li0P1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
FA [auth Q]Ribosomal_L17_1e5li0Q1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
HA [auth S]Ribosomal_L19e5li0S1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
IA [auth T]Ribosomal_L20e5li0T1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
KA [auth V]Ribosomal_L22e5li0V1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
QA [auth 1]Ribosomal_L29e5li011 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
RA [auth 2]Ribosomal_L30e5li021 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
SA [auth 3]Ribosomal_L31e5li031 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
TA [auth 4]Ribosomal_L32pe5li041 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
XA [auth 8]Ribosomal_L36e5li081 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
WA [auth 7]Ribosomal_L35pe5li071 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
VA [auth 6]Ribosomal_L34e5li061 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
UA [auth 5]Ribosomal_L33e5li051 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
PA [auth 0]Ribosomal_L28e5li001 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
OA [auth Z]Ribosomal_L27e5li0Z1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
NA [auth Y]Ribosomal_L25pe5li0Y1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
D [auth d]S4e5li0d1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
MA [auth X]ribosomal_L24_1e5li0X1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
LA [auth W]Ribosomal_L23_2e5li0W1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
JA [auth U]Ribosomal_L21pe5li0U1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
GA [auth R]Ribosomal_L18pe5li0R1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
C [auth c]Ribosomal_S3_Ce5li0c2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
C [auth c]KH_2_1e5li0c1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
CA [auth N]Ribosomal_L14e5li0N1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
AA [auth H]Ribosomal_L6e5li0H1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
AA [auth H]Ribosomal_L6_1e5li0H2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
S [auth s]Ribosomal_S19e5li0s1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
Q [auth q]Ribosomal_S17_1e5li0q1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
N [auth n]Ribosomal_S14e5li0n1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14ECOD (1.6)
M [auth m]Ribosomal_S13_1e5li0m1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
J [auth j]Ribosomal_S10e5li0j1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
W [auth D]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
W [auth D]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
W [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
W [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
X [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
X [auth E]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
X [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
Y [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
Y [auth F]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
Z [auth G]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
Z [auth G]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
Z [auth G]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
BA [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
BA [auth M]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
DA [auth O]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
DA [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
EA [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
EA [auth P]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
FA [auth Q]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
FA [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
HA [auth S]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
HA [auth S]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
IA [auth T]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
IA [auth T]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
KA [auth V]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
QA [auth 1]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
RA [auth 2]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
SA [auth 3]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
TA [auth 4]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
XA [auth 8]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
WA [auth 7]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
VA [auth 6]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
UA [auth 5]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
PA [auth 0]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
OA [auth Z]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
NA [auth Y]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
MA [auth X]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
MA [auth X]PF00467KOW motif (KOW)KOW motif- Family
LA [auth W]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
JA [auth U]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
GA [auth R]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
GA [auth R]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
CA [auth N]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
CA [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
AA [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
V [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth a]16S ribosomal RNA---
B [auth b]30S ribosomal protein S2
E [auth e]30S ribosomal protein S5
F [auth f]30S ribosomal protein S6
G [auth g]30S ribosomal protein S7
H [auth h]30S ribosomal protein S8
I [auth i]30S ribosomal protein S9
K [auth k]30S ribosomal protein S11
L [auth l]30S ribosomal protein S12
O [auth o]30S ribosomal protein S15
P [auth p]30S ribosomal protein S16
R [auth r]30S ribosomal protein S18
T [auth t]30S ribosomal protein S20
U [auth A]23S ribosomal RNA---
W [auth D]50S ribosomal protein L2
X [auth E]50S ribosomal protein L3
Y [auth F]50S ribosomal protein L4
Z [auth G]50S ribosomal protein L5
BA [auth M]50S ribosomal protein L13
DA [auth O]50S ribosomal protein L15
EA [auth P]50S ribosomal protein L16
FA [auth Q]50S ribosomal protein L17
HA [auth S]50S ribosomal protein L19
IA [auth T]50S ribosomal protein L20
KA [auth V]50S ribosomal protein L22
QA [auth 1]50S ribosomal protein L29
RA [auth 2]50S ribosomal protein L30
SA [auth 3]50S ribosomal protein L31 type B
TA [auth 4]50S ribosomal protein L32
XA [auth 8]50S ribosomal protein L36
WA [auth 7]50S ribosomal protein L35
VA [auth 6]50S ribosomal protein L34
UA [auth 5]50S ribosomal protein L33 2
PA [auth 0]50S ribosomal protein L28
OA [auth Z]50S ribosomal protein L27
NA [auth Y]50S ribosomal protein L25
D [auth d]30S ribosomal protein S4
MA [auth X]50S ribosomal protein L24
LA [auth W]50S ribosomal protein L23
JA [auth U]50S ribosomal protein L21
GA [auth R]50S ribosomal protein L18
C [auth c]30S ribosomal protein S3
CA [auth N]50S ribosomal protein L14
AA [auth H]50S ribosomal protein L6
V [auth B]5S ribosomal RNA---
S [auth s]30S ribosomal protein S19
Q [auth q]30S ribosomal protein S17
N [auth n]30S ribosomal protein S14 type Z
M [auth m]30S ribosomal protein S13
J [auth j]30S ribosomal protein S10

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
E [auth e]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
E [auth e]IPR000851Small ribosomal subunit protein uS5Family
E [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth g]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
G [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth g]IPR000235Small ribosomal subunit protein uS7Family
G [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
H [auth h]IPR000630Small ribosomal subunit protein uS8Family
H [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
H [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
I [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
I [auth i]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
I [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth i]IPR000754Small ribosomal subunit protein uS9Family
I [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
K [auth k]IPR001971Small ribosomal subunit protein uS11Family
K [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth k]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
K [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
L [auth l]IPR006032Small ribosomal subunit protein uS12Family
L [auth l]IPR005679Ribosomal protein uS12, bacteriaFamily
L [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth o]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
O [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth o]IPR000589Small ribosomal subunit protein uS15Family
P [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth p]IPR000307Small ribosomal subunit protein bS16Family
R [auth r]IPR001648Small ribosomal subunit protein bS18Family
R [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
T [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
T [auth t]IPR002583Small ribosomal subunit protein bS20Family
W [auth D]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
W [auth D]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
W [auth D]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
W [auth D]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth D]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
W [auth D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
W [auth D]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
W [auth D]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
W [auth D]IPR002171Large ribosomal subunit protein uL2Family
X [auth E]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
X [auth E]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
X [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
X [auth E]IPR000597Large ribosomal subunit protein uL3Family
Y [auth F]IPR013005Large ribosomal subunit protein uL4-likeFamily
Y [auth F]IPR002136Large ribosomal subunit protein uL4Family
Y [auth F]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
Z [auth G]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
Z [auth G]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
Z [auth G]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
Z [auth G]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
Z [auth G]IPR002132Large ribosomal subunit protein uL5Family
Z [auth G]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
BA [auth M]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
BA [auth M]IPR005822Large ribosomal subunit protein uL13Family
BA [auth M]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
BA [auth M]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
DA [auth O]IPR021131Large ribosomal subunit protein uL15/eL18Domain
DA [auth O]IPR030878Large ribosomal subunit protein uL15Family
DA [auth O]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
DA [auth O]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
DA [auth O]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
EA [auth P]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
EA [auth P]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
EA [auth P]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
EA [auth P]IPR016180Large ribosomal subunit protein uL16 domainDomain
EA [auth P]IPR047873Large ribosomal subunit protein uL16Family
FA [auth Q]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
FA [auth Q]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
FA [auth Q]IPR000456Large ribosomal subunit protein bL17Family
HA [auth S]IPR001857Large ribosomal subunit protein bL19Family
HA [auth S]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
HA [auth S]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
HA [auth S]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IA [auth T]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
IA [auth T]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
IA [auth T]IPR005813Large ribosomal subunit protein bL20Family
KA [auth V]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
KA [auth V]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
KA [auth V]IPR001063Large ribosomal subunit protein uL22Family
KA [auth V]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
KA [auth V]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
QA [auth 1]IPR050063Universal ribosomal protein uL29Family
QA [auth 1]IPR001854Large ribosomal subunit protein uL29Family
QA [auth 1]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
RA [auth 2]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
RA [auth 2]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
RA [auth 2]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
SA [auth 3]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
SA [auth 3]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
SA [auth 3]IPR027493Large ribosomal subunit protein bL31 type BFamily
SA [auth 3]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
TA [auth 4]IPR002677Large ribosomal subunit protein bL32Family
TA [auth 4]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
TA [auth 4]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
XA [auth 8]IPR000473Large ribosomal subunit protein bL36Family
XA [auth 8]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
WA [auth 7]IPR021137Large ribosomal subunit protein bL35-likeFamily
WA [auth 7]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
WA [auth 7]IPR001706Large ribosomal subunit protein bL35Family
WA [auth 7]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
VA [auth 6]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
VA [auth 6]IPR000271Large ribosomal subunit protein bL34Family
UA [auth 5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
UA [auth 5]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
UA [auth 5]IPR001705Large ribosomal subunit protein bL33Family
UA [auth 5]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
PA [auth 0]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
PA [auth 0]IPR050096Bacterial ribosomal protein bL28Family
PA [auth 0]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
PA [auth 0]IPR026569Large ribosomal subunit protein bL28Family
PA [auth 0]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
OA [auth Z]IPR001684Large ribosomal subunit protein bL27Family
OA [auth Z]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
NA [auth Y]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
NA [auth Y]IPR001021Ribosomal protein bL25, long-formFamily
NA [auth Y]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
NA [auth Y]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
NA [auth Y]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
NA [auth Y]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
NA [auth Y]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
D [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth d]IPR002942RNA-binding S4 domainDomain
D [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth d]IPR022801Small ribosomal subunit protein uS4Family
D [auth d]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
MA [auth X]IPR003256Large ribosomal subunit protein uL24Family
MA [auth X]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
MA [auth X]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MA [auth X]IPR005824KOWDomain
MA [auth X]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth X]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
LA [auth W]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
LA [auth W]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
LA [auth W]IPR013025Large ribosomal subunit protein uL23-likeFamily
JA [auth U]IPR028909Large ribosomal subunit protein bL21-likeFamily
JA [auth U]IPR001787Large ribosomal subunit protein bL21Family
JA [auth U]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
GA [auth R]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
GA [auth R]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
C [auth c]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
C [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth c]IPR004087K Homology domainDomain
C [auth c]IPR004044K Homology domain, type 2Domain
C [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
CA [auth N]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
CA [auth N]IPR000218Large ribosomal subunit protein uL14Family
CA [auth N]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
CA [auth N]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
AA [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
AA [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
AA [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
AA [auth H]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
AA [auth H]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
S [auth s]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
S [auth s]IPR002222Small ribosomal subunit protein uS19Family
S [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
S [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Q [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
Q [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
Q [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth q]IPR000266Small ribosomal subunit protein uS17Family
N [auth n]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
N [auth n]IPR001209Small ribosomal subunit protein uS14Family
N [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
N [auth n]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
M [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth m]IPR001892Small ribosomal subunit protein uS13Family
M [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth m]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
J [auth j]IPR001848Small ribosomal subunit protein uS10Family
J [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
J [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
J [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site