5MH3 | pdb_00005mh3

Crystal structure of a DM9 domain containing protein from Crassostrea gigas with K43A mutation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	MFPT repeat-like	8105536	3001021	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MFPT repeat-like	8105536	3001021	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MFPT repeat-like	8105536	3001021	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	MFPT repeat-like	8105536	3001021	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	MFPT repeat-like	8105536	3001021	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	MFPT repeat-like	8105536	3001021	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	MFPT repeat-like	8105536	3001021	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	MFPT repeat-like	8105536	3001021	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	MFPT repeat-like	8105536	3001021	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	MFPT repeat-like	8105536	3001021	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	MFPT repeat-like	8105536	3001021	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	MFPT repeat-like	8105536	3001021	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF3421	e5mh3A1	A: beta barrels	X: MFPT repeat (From Topology)	H: MFPT repeat (From Topology)	T: MFPT repeat	F: DUF3421	ECOD (1.6)
B	DUF3421	e5mh3B2	A: beta barrels	X: MFPT repeat (From Topology)	H: MFPT repeat (From Topology)	T: MFPT repeat	F: DUF3421	ECOD (1.6)
C	DUF3421	e5mh3C1	A: beta barrels	X: MFPT repeat (From Topology)	H: MFPT repeat (From Topology)	T: MFPT repeat	F: DUF3421	ECOD (1.6)
D	DUF3421	e5mh3D1	A: beta barrels	X: MFPT repeat (From Topology)	H: MFPT repeat (From Topology)	T: MFPT repeat	F: DUF3421	ECOD (1.6)
E	DUF3421	e5mh3E2	A: beta barrels	X: MFPT repeat (From Topology)	H: MFPT repeat (From Topology)	T: MFPT repeat	F: DUF3421	ECOD (1.6)
F	DUF3421	e5mh3F1	A: beta barrels	X: MFPT repeat (From Topology)	H: MFPT repeat (From Topology)	T: MFPT repeat	F: DUF3421	ECOD (1.6)
G	DUF3421	e5mh3G2	A: beta barrels	X: MFPT repeat (From Topology)	H: MFPT repeat (From Topology)	T: MFPT repeat	F: DUF3421	ECOD (1.6)
H	DUF3421	e5mh3H1	A: beta barrels	X: MFPT repeat (From Topology)	H: MFPT repeat (From Topology)	T: MFPT repeat	F: DUF3421	ECOD (1.6)
I	DUF3421	e5mh3I1	A: beta barrels	X: MFPT repeat (From Topology)	H: MFPT repeat (From Topology)	T: MFPT repeat	F: DUF3421	ECOD (1.6)
J	DUF3421	e5mh3J1	A: beta barrels	X: MFPT repeat (From Topology)	H: MFPT repeat (From Topology)	T: MFPT repeat	F: DUF3421	ECOD (1.6)
K	DUF3421	e5mh3K2	A: beta barrels	X: MFPT repeat (From Topology)	H: MFPT repeat (From Topology)	T: MFPT repeat	F: DUF3421	ECOD (1.6)
L	DUF3421	e5mh3L1	A: beta barrels	X: MFPT repeat (From Topology)	H: MFPT repeat (From Topology)	T: MFPT repeat	F: DUF3421	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF11901	DM9 repeat (DM9)	DM9 repeat	This repeat of unknown function was first identified in Diptera proteins; later on it was found in a wide range of invertebrates and vertebrates [1], such as natterin [2,3]. It is often present in proteins comprising only two or four DM9 repeats and ...	This repeat of unknown function was first identified in Diptera proteins; later on it was found in a wide range of invertebrates and vertebrates [1], such as natterin [2,3]. It is often present in proteins comprising only two or four DM9 repeats and occasionally is linked to other domains at its N- or C-terminal. In the mannose-specific lectin CGL1 from Crassostrea gigas, DM9 exhibits high binding specificity and avidity toward D-mannose residue and served as a pattern recognition receptor (PRR) with a broad range of recognition spectrum to various pathogen-associated molecular patterns [4]. It also mediates immune recognition and cellular encapsulation [5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Natterin-3	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR006616	DM9 repeat	Repeat

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.