5MSY | pdb_00005msy

Glycoside hydrolase BT_1012

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092269 3001528 SCOP2B (2022-06-29)
ASCOP2B Superfamily(Trans)glycosidases 8092270 3000313 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092269 3001528 SCOP2B (2022-06-29)
BSCOP2B Superfamily(Trans)glycosidases 8092270 3000313 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092269 3001528 SCOP2B (2022-06-29)
CSCOP2B Superfamily(Trans)glycosidases 8092270 3000313 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACollagen_bind_2e5msyA1 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
ADUF4038e5msyA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)
BCollagen_bind_2e5msyB2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
BDUF4038e5msyB1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)
CCollagen_bind_2e5msyC2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
CDUF4038e5msyC1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF12904Putative collagen-binding domain of a collagenase (Collagen_bind_2)Putative collagen-binding domain of a collagenaseThis domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. It is the C-terminal part of the PDB:3kzs structure determined from Swiss:Q8A905 (information derived from TOPSAN). Domain
A, B, C
PF13204Apiosidase-like, catalytic domain (Apiosidase)Apiosidase-like, catalytic domainThis entry represents the catalytic domain of endo-apiosidase (Swiss:Q8A905) and related proteins, some of which form part of the rhamnogalacturonan-II (RG-II) degradome. This domain adopts an (alpha-beta)8-barrel that harbours the aspartate and glut ...This entry represents the catalytic domain of endo-apiosidase (Swiss:Q8A905) and related proteins, some of which form part of the rhamnogalacturonan-II (RG-II) degradome. This domain adopts an (alpha-beta)8-barrel that harbours the aspartate and glutamate residues essential for the catalytic activity.
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR024749Putative collagen-binding domainDomain
A, B, C
IPR017853Glycoside hydrolase superfamilyHomologous Superfamily
A, B, C
IPR025277Apiosidase-like, catalytic domainDomain