5NFF | pdb_00005nff

Crystal structure of GP1 receptor binding domain from Morogoro virus

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)
B [auth A]	SCOP2 Family	Lassa virus GP1 subunit, receptor binding domain-like	8073793	4006033	SCOP2 (2022-06-29)
B [auth A]	SCOP2 Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2 (2022-06-29)
A [auth B]	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106411	3002852	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	Arena_glycoprot_1st	e5nffP1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
O	Arena_glycoprot_1st	e5nffO1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
N	Arena_glycoprot_1st	e5nffN1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
M	Arena_glycoprot_1st	e5nffM1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
L	Arena_glycoprot_1st	e5nffL1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
K	Arena_glycoprot_1st	e5nffK1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
J	Arena_glycoprot_1st	e5nffJ1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
I	Arena_glycoprot_1st	e5nffI1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
H	Arena_glycoprot_1st	e5nffH1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
G	Arena_glycoprot_1st	e5nffG1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
F	Arena_glycoprot_1st	e5nffF1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
E	Arena_glycoprot_1st	e5nffE1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
D	Arena_glycoprot_1st	e5nffD1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
C	Arena_glycoprot_1st	e5nffC1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
B [auth A]	Arena_glycoprot_1st	e5nffA1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
A [auth B]	Arena_glycoprot_1st	e5nffB1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F, G, H, I, J, K, L, M, N, O, P	Glycoprotein	cation binding ion binding binding metal ion binding small molecule binding	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport establishment of localization viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport establishment of localization vesicle-mediated transport localization symbiont entry into host cell symbiont entry into host cellular process endocytosis involved in viral entry into host cell receptor-mediated endocytosis endocytosis	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum host cell membrane other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endomembrane system host intracellular region host cell endoplasmic reticulum membrane host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum host cell membrane other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endomembrane system host intracellular region host cell endoplasmic reticulum membrane virion component viral membrane viral envelope membrane host cell plasma membrane virion membrane host cell Golgi membrane host cell Golgi apparatus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR043015	Arenavirus glycoprotein, zinc binding domain	Homologous Superfamily
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR001535	Arenavirus glycoprotein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.