5V6H | pdb_00005v6h

Crystal structure of Myosin VI in complex with GH2 domain of GIPC2

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	UNK_F_TYPE	e5v6hI1	A: alpha arrays	X: PWI domain-like	H: GIPC1 GH2 domain (From Topology)	T: GIPC1 GH2 domain	F: UNK_F_TYPE	ECOD (1.6)
G	UNK_F_TYPE	e5v6hG1	A: alpha arrays	X: PWI domain-like	H: GIPC1 GH2 domain (From Topology)	T: GIPC1 GH2 domain	F: UNK_F_TYPE	ECOD (1.6)
E	UNK_F_TYPE	e5v6hE1	A: alpha arrays	X: PWI domain-like	H: GIPC1 GH2 domain (From Topology)	T: GIPC1 GH2 domain	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e5v6hC1	A: alpha arrays	X: PWI domain-like	H: GIPC1 GH2 domain (From Topology)	T: GIPC1 GH2 domain	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e5v6hA1	A: alpha arrays	X: PWI domain-like	H: GIPC1 GH2 domain (From Topology)	T: GIPC1 GH2 domain	F: UNK_F_TYPE	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J	Unconventional myosin-VI	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding cytoskeletal motor activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding cytoskeletal motor activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding calmodulin binding	trans-synaptic signaling regulation of biological process regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling biological regulation cell-cell signaling presynaptic modulation of chemical synaptic transmission chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling trans-synaptic signaling regulation of biological process regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling biological regulation cell-cell signaling presynaptic modulation of chemical synaptic transmission chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication cellular process localization macromolecule localization intracellular protein localization developmental process ear development sensory organ development inner ear development animal organ development anatomical structure development import into cell cellular localization receptor internalization transport postsynaptic neurotransmitter receptor internalization establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse neurotransmitter receptor internalization regulation of postsynaptic membrane neurotransmitter receptor levels postsynaptic endocytosis establishment of localization in cell regulation of biological quality endocytosis receptor-mediated endocytosis establishment of protein localization protein targeting multicellular organismal process system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus cellular developmental process epidermis development epithelial cell differentiation hair cell differentiation neurogenesis multicellular organism development neuron differentiation cell differentiation system development mechanoreceptor differentiation epithelium development epidermal cell differentiation inner ear auditory receptor cell differentiation nervous system development tissue development inner ear receptor cell differentiation generation of neurons cellular response to stimulus response to electrical stimulus response to stimulus cellular response to electrical stimulus response to abiotic stimulus cellular response to abiotic stimulus cellular response to environmental stimulus cellular component organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly synapse organization cellular component organization or biogenesis synapse assembly behavior locomotory behavior organic anion transport nitrogen compound transport carboxylic acid transport secretion export from cell organic acid transport amino acid transport acidic amino acid transport secretion by cell dicarboxylic acid transport glutamate secretion ear morphogenesis embryonic organ morphogenesis embryonic morphogenesis embryo development anatomical structure morphogenesis sensory organ morphogenesis inner ear morphogenesis animal organ morphogenesis embryonic organ development protein transport plasma membrane bounded cell projection organization cell projection organization cell development neuron projection development dendrite development neuron development regulation of synaptic plasticity	cellular anatomical structure clathrin-coated pit membrane endomembrane system intracellular anatomical structure cytoplasm cytosol apical part of cell cluster of actin-based cell projections brush border membrane-bounded organelle vesicle membrane organelle vesicle cellular anatomical structure clathrin-coated pit membrane endomembrane system intracellular anatomical structure cytoplasm cytosol apical part of cell cluster of actin-based cell projections brush border membrane-bounded organelle vesicle membrane organelle vesicle organelle membrane intracellular organelle protein-containing complex cytoskeleton membraneless organelle intracellular membraneless organelle actin cytoskeleton myosin complex synapse cell junction glutamatergic synapse Golgi apparatus intracellular membrane-bounded organelle cell projection actin-based cell projection microvillus plasma membrane bounded cell projection perinuclear region of cytoplasm cochlear hair cell ribbon synapse ribbon synapse somatodendritic compartment cell body neuronal cell body axon neuron projection filopodium postsynapse postsynaptic cytoskeleton postsynaptic actin cytoskeleton ruffle cell leading edge plasma membrane leading edge membrane cell periphery ruffle membrane plasma membrane region cell projection membrane intracellular vesicle cytoplasmic vesicle clathrin-coated vesicle coated vesicle presynapse presynaptic endocytic zone postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse Schaffer collateral - CA1 synapse nucleus
A, C, E, G, I	PDZ domain-containing protein GIPC2	identical protein binding protein binding binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B, D, F, H, J	IPR004009	Myosin, SH3 domain	Domain
B, D, F, H, J	IPR032412	Myosin VI, cargo binding domain	Domain
B, D, F, H, J	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
B, D, F, H, J	IPR001609	Myosin head, motor domain-like	Domain
B, D, F, H, J	IPR049016	Myosin VI, lever arm	Domain
B, D, F, H, J	IPR036114	Class VI myosin, motor domain	Domain
B, D, F, H, J	IPR008989	Myosin S1 fragment, N-terminal	Homologous Superfamily
A, C, E, G, I	IPR055349	GIPC, GH2	Domain
A, C, E, G, I	IPR017379	PDZ domain-containing protein GIPC1/2/3	Family
A, C, E, G, I	IPR001478	PDZ domain	Domain
A, C, E, G, I	IPR036034	PDZ superfamily	Homologous Superfamily
A, C, E, G, I	IPR056814	GIPC1-3, GH1 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.