5VXX | pdb_00005vxx

Cryo-EM reconstruction of Neisseria gonorrhoeae Type IV pilus


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)
USCOP2B SuperfamilyPili subunits 8034848 3000097 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APiline5vxxA1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
BPiline5vxxB1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
CPiline5vxxC1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
DPiline5vxxD1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
EPiline5vxxE1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
FPiline5vxxF1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
GPiline5vxxG1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
HPiline5vxxH1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
IPiline5vxxI1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
JPiline5vxxJ1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
KPiline5vxxK1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
LPiline5vxxL1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
MPiline5vxxM1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
NPiline5vxxN1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
OPiline5vxxO1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
PPiline5vxxP1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
QPiline5vxxQ1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
RPiline5vxxR1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
SPiline5vxxS1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
TPiline5vxxT1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)
UPiline5vxxU1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: PilinECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF07963Prokaryotic N-terminal methylation motif (N_methyl)Prokaryotic N-terminal methylation motif- Motif
A, B, C, D, E
PF00114Pilin (bacterial filament) (Pilin)Pilin (bacterial filament)Proteins with only the short N-terminal methylation site are not separated from the noise. The Prosite pattern detects those better. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Fimbrial protein-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR012902Prokaryotic N-terminal methylation sitePTM
A, B, C, D, E
IPR001082Fimbrial protein pilinFamily
A, B, C, D, E
IPR050470Type IV Pilus and Type II Secretion System CoreFamily
A, B, C, D, E
IPR045584Pilin-likeHomologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D, E
OPMTransmembraneBitopic proteinsType IV pilinBacterial pilin