Cryo-EM reconstruction of Neisseria gonorrhoeae Type IV pilus
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
R | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
S | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
T | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
U | SCOP2B Superfamily | Pili subunits | 8034848 | 3000097 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Pilin | e5vxxA1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
B | Pilin | e5vxxB1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
C | Pilin | e5vxxC1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
D | Pilin | e5vxxD1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
E | Pilin | e5vxxE1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
F | Pilin | e5vxxF1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
G | Pilin | e5vxxG1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
H | Pilin | e5vxxH1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
I | Pilin | e5vxxI1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
J | Pilin | e5vxxJ1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
K | Pilin | e5vxxK1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
L | Pilin | e5vxxL1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
M | Pilin | e5vxxM1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
N | Pilin | e5vxxN1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
O | Pilin | e5vxxO1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
P | Pilin | e5vxxP1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
Q | Pilin | e5vxxQ1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
R | Pilin | e5vxxR1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
S | Pilin | e5vxxS1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
T | Pilin | e5vxxT1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
U | Pilin | e5vxxU1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: Pilin | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07963 | Prokaryotic N-terminal methylation motif (N_methyl) | Prokaryotic N-terminal methylation motif | - | Motif | |
PF00114 | Pilin (bacterial filament) (Pilin) | Pilin (bacterial filament) | Proteins with only the short N-terminal methylation site are not separated from the noise. The Prosite pattern detects those better. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Fimbrial protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Bitopic proteins | Type IV pilin | Bacterial pilin |