5VXY | pdb_00005vxy

Cryo-EM reconstruction of PAK pilus from Pseudomonas aeruginosa


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)
USCOP2B SuperfamilyPili subunits 8033645 3000097 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APilin_1e5vxyA1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
BPilin_1e5vxyB1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
CPilin_1e5vxyC1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
DPilin_1e5vxyD1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
EPilin_1e5vxyE1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
FPilin_1e5vxyF1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
GPilin_1e5vxyG1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
HPilin_1e5vxyH1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
IPilin_1e5vxyI1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
JPilin_1e5vxyJ1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
KPilin_1e5vxyK1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
LPilin_1e5vxyL1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
MPilin_1e5vxyM1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
NPilin_1e5vxyN1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
OPilin_1e5vxyO1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
PPilin_1e5vxyP1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
QPilin_1e5vxyQ1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
RPilin_1e5vxyR1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
SPilin_1e5vxyS1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
TPilin_1e5vxyT1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)
UPilin_1e5vxyU1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: Pilin_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF07963Prokaryotic N-terminal methylation motif (N_methyl)Prokaryotic N-terminal methylation motif- Motif
A, B, C, D, E
PF00114Pilin (bacterial filament) (Pilin)Pilin (bacterial filament)Proteins with only the short N-terminal methylation site are not separated from the noise. The Prosite pattern detects those better. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Fimbrial protein-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR012902Prokaryotic N-terminal methylation sitePTM
A, B, C, D, E
IPR001082Fimbrial protein pilinFamily
A, B, C, D, E
IPR050470Type IV Pilus and Type II Secretion System CoreFamily
A, B, C, D, E
IPR045584Pilin-likeHomologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D, E
OPMTransmembraneBitopic proteinsType IV pilinBacterial pilin