5YB0 | pdb_00005yb0

Crystal Structure of Wild Type Phosphoserine aminotransferase (PSAT) from E. histolytica


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5yb0a_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Entamoeba histolytica ) [TaxId: 5759 ], SCOPe (2.08)
Bd5yb0b_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Entamoeba histolytica ) [TaxId: 5759 ], SCOPe (2.08)
Cd5yb0c_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Entamoeba histolytica ) [TaxId: 5759 ], SCOPe (2.08)
Dd5yb0d_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Entamoeba histolytica ) [TaxId: 5759 ], SCOPe (2.08)
Ed5yb0e_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Entamoeba histolytica ) [TaxId: 5759 ], SCOPe (2.08)
Fd5yb0f_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Entamoeba histolytica ) [TaxId: 5759 ], SCOPe (2.08)
Gd5yb0g_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Entamoeba histolytica ) [TaxId: 5759 ], SCOPe (2.08)
Hd5yb0h_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Entamoeba histolytica ) [TaxId: 5759 ], SCOPe (2.08)
Id5yb0i_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Entamoeba histolytica ) [TaxId: 5759 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPLP-dependent transferases 8078942 3000954 SCOP2B (2022-06-29)
BSCOP2 FamilyGABA-aminotransferase-like 8078941 4000675 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyPLP-dependent transferases 8078942 3000954 SCOP2 (2022-06-29)
CSCOP2B SuperfamilyPLP-dependent transferases 8078942 3000954 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPLP-dependent transferases 8078942 3000954 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyPLP-dependent transferases 8078942 3000954 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyPLP-dependent transferases 8078942 3000954 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyPLP-dependent transferases 8078942 3000954 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPLP-dependent transferases 8078942 3000954 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyPLP-dependent transferases 8078942 3000954 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyPLP-dependent transferases 8078942 3000954 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AAminotran_5_C_1e5yb0A1 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: Aminotran_5_C_1ECOD (1.6)
AUNK_F_TYPEe5yb0A2 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
BAminotran_5_C_1e5yb0B2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: Aminotran_5_C_1ECOD (1.6)
BUNK_F_TYPEe5yb0B1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
CAminotran_5_C_1e5yb0C2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: Aminotran_5_C_1ECOD (1.6)
CUNK_F_TYPEe5yb0C1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
DAminotran_5_C_1e5yb0D1 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: Aminotran_5_C_1ECOD (1.6)
DUNK_F_TYPEe5yb0D2 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
EAminotran_5_C_1e5yb0E2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: Aminotran_5_C_1ECOD (1.6)
EUNK_F_TYPEe5yb0E1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
FAminotran_5_C_1e5yb0F1 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: Aminotran_5_C_1ECOD (1.6)
FUNK_F_TYPEe5yb0F2 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
GAminotran_5_C_1e5yb0G1 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: Aminotran_5_C_1ECOD (1.6)
GUNK_F_TYPEe5yb0G2 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
HAminotran_5_C_1e5yb0H1 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: Aminotran_5_C_1ECOD (1.6)
HUNK_F_TYPEe5yb0H2 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
IAminotran_5_C_1e5yb0I2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: Aminotran_5_C_1ECOD (1.6)
IUNK_F_TYPEe5yb0I1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
JUNK_F_TYPEe5yb0J1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
KAminotran_5_C_1e5yb0K1 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: Aminotran_5_C_1ECOD (1.6)
KUNK_F_TYPEe5yb0K2 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
LUNK_F_TYPEe5yb0L1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
A3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
B3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
B3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
C3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
C3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
D3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
D3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
E3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
E3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
F3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (utative)
F3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (utative)
G3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
G3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
H3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
H3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
I3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (utative)
I3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (utative)
J3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (utative)
K3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (utative)
K3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (utative)
L3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00266Aminotransferase class-V (Aminotran_5)Aminotransferase class-VThis domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Phosphoserine aminotransferase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR015424Pyridoxal phosphate-dependent transferaseHomologous Superfamily
A, B, C, D, E
IPR015421Pyridoxal phosphate-dependent transferase, major domainHomologous Superfamily
A, B, C, D, E
IPR015422Pyridoxal phosphate-dependent transferase, small domainHomologous Superfamily
A, B, C, D, E
IPR000192Aminotransferase class V domainDomain
A, B, C, D, E
IPR022278Phosphoserine aminotransferaseFamily