2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B [auth Ab] | SCOP2 Family | Ribosomal protein S2-like | 8096093 | 4003744 | SCOP2 (2022-06-29) |
| B [auth Ab] | SCOP2 Superfamily | SIS domain/Ribosomal protein S2-like | 8096094 | 3001397 | SCOP2 (2022-06-29) |
| D [auth Ad] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083394 | 3001473 | SCOP2B (2022-06-29) |
| G [auth Ag] | SCOP2B Superfamily | Ribosomal protein S7 | 8094561 | 3000799 | SCOP2B (2022-06-29) |
| H [auth Ah] | SCOP2B Superfamily | Ribosomal protein S8 | 8079053 | 3000709 | SCOP2B (2022-06-29) |
| K [auth Ak] | SCOP2B Superfamily | Translational machinery components | 8096098 | 3000571 | SCOP2B (2022-06-29) |
| L [auth Al] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8100938 | 3000135 | SCOP2B (2022-06-29) |
| M [auth Am] | SCOP2B Superfamily | S13-like H2TH domain | 8094106 | 3000053 | SCOP2B (2022-06-29) |
| O [auth Ao] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8072619 | 3001284 | SCOP2B (2022-06-29) |
| P [auth Ap] | SCOP2B Superfamily | Ribosomal protein S16 | 8095313 | 3000680 | SCOP2B (2022-06-29) |
| Q [auth Aq] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059274 | 3000135 | SCOP2B (2022-06-29) |
| S [auth As] | SCOP2 Family | Ribosomal protein S19 | 8096099 | 4001081 | SCOP2 (2022-06-29) |
| S [auth As] | SCOP2 Superfamily | Ribosomal protein S19 | 8096100 | 3000686 | SCOP2 (2022-06-29) |
| U [auth Au] | SCOP2 Family | Ribosomal protein S21 | 8096095 | 4006173 | SCOP2 (2022-06-29) |
| U [auth Au] | SCOP2 Superfamily | Ribosomal protein S21 | 8096096 | 3002159 | SCOP2 (2022-06-29) |
| Z [auth AD] | SCOP2B Superfamily | Translational proteins | 8100942 | 3000811 | SCOP2B (2022-06-29) |
| BA [auth AF] | SCOP2B Superfamily | RL5-like | 8093894 | 3001709 | SCOP2B (2022-06-29) |
| DA [auth AH] | SCOP2B Superfamily | Ribosomal protein L13 | 8066061 | 3001134 | SCOP2B (2022-06-29) |
| FA [auth AJ] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8070556 | 4003555 | SCOP2 (2022-06-29) |
| FA [auth AJ] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8070557 | 3001045 | SCOP2 (2022-06-29) |
| GA [auth AK] | SCOP2 Family | Ribosomal protein L16p | 8076042 | 4003717 | SCOP2 (2022-06-29) |
| GA [auth AK] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8076043 | 3000884 | SCOP2 (2022-06-29) |
| HA [auth AL] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8089024 | 3000995 | SCOP2B (2022-06-29) |
| IA [auth AM] | SCOP2B Superfamily | Translational machinery components | 8074010 | 3000571 | SCOP2B (2022-06-29) |
| JA [auth AN] | SCOP2 Family | Ribosomal protein L19 | 8082424 | 4001761 | SCOP2 (2022-06-29) |
| JA [auth AN] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082425 | 3000334 | SCOP2 (2022-06-29) |
| KA [auth AO] | SCOP2 Family | Ribosomal protein L20 | 8075001 | 4001930 | SCOP2 (2022-06-29) |
| KA [auth AO] | SCOP2 Superfamily | Ribosomal protein L20 | 8075002 | 3000563 | SCOP2 (2022-06-29) |
| OA [auth AS] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8095283 | 3000334 | SCOP2B (2022-06-29) |
| RA [auth AV] | SCOP2 Family | Ribosomal protein L28 | 8089399 | 4003961 | SCOP2 (2022-06-29) |
| RA [auth AV] | SCOP2 Superfamily | L28p-like | 8089400 | 3001966 | SCOP2 (2022-06-29) |
| TA [auth AX] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8095165 | 3001378 | SCOP2B (2022-06-29) |
| UA [auth AY] | SCOP2 Family | Ribosomal protein L31p | 8100931 | 4003966 | SCOP2 (2022-06-29) |
| UA [auth AY] | SCOP2 Superfamily | L28p-like | 8100932 | 3001966 | SCOP2 (2022-06-29) |
| YA [auth A3] | SCOP2 Family | Ribosomal protein L35p | 8083331 | 4003406 | SCOP2 (2022-06-29) |
| YA [auth A3] | SCOP2 Superfamily | L35p-like | 8083332 | 3000790 | SCOP2 (2022-06-29) |
| I [auth Ai] | SCOP2 Family | Translational machinery components | 8096263 | 4000951 | SCOP2 (2022-06-29) |
| I [auth Ai] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8096264 | 3000100 | SCOP2 (2022-06-29) |
| F [auth Af] | SCOP2B Superfamily | Ribosomal protein S6 | 8066491 | 3001323 | SCOP2B (2022-06-29) |
| ZA [auth A4] | SCOP2 Family | Ribosomal protein L36 | 8083305 | 4003715 | SCOP2 (2022-06-29) |
| ZA [auth A4] | SCOP2 Superfamily | Ribosomal protein L36 | 8083306 | 3001346 | SCOP2 (2022-06-29) |
| WA [auth A1] | SCOP2 Family | Ribosomal protein L33p | 8075055 | 4000511 | SCOP2 (2022-06-29) |
| WA [auth A1] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8075056 | 3001320 | SCOP2 (2022-06-29) |
| PA [auth AT] | SCOP2 Family | Ribosomal protein L25-like | 8096331 | 4002376 | SCOP2 (2022-06-29) |
| PA [auth AT] | SCOP2 Superfamily | Ribosomal protein L25-like | 8096332 | 3001161 | SCOP2 (2022-06-29) |
| NA [auth AR] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8086048 | 3000210 | SCOP2B (2022-06-29) |
| MA [auth AQ] | SCOP2B Superfamily | Ribosomal protein L22 | 8076728 | 3001078 | SCOP2B (2022-06-29) |
| N [auth An] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8093912 | 3000068 | SCOP2B (2022-06-29) |
| J [auth Aj] | SCOP2B Superfamily | Ribosomal protein S10 | 8094879 | 3001336 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth Ab] | Ribosomal_S2 | e5ngmAb1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2 | ECOD (1.6) |
| C [auth Ac] | Ribosomal_S3_C | e5ngmAc1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
| C [auth Ac] | KH_2_1 | e5ngmAc2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_1 | ECOD (1.6) |
| D [auth Ad] | S4 | e5ngmAd1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
| E [auth Ae] | Ribosomal_S5_C | e5ngmAe1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C | ECOD (1.6) |
| E [auth Ae] | Ribosomal_S5 | e5ngmAe2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5 | ECOD (1.6) |
| G [auth Ag] | Ribosomal_S7_1 | e5ngmAg1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
| H [auth Ah] | Ribosomal_S8_N | e5ngmAh1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N | ECOD (1.6) |
| H [auth Ah] | Ribosomal_S8_C | e5ngmAh2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C | ECOD (1.6) |
| K [auth Ak] | Ribosomal_S11 | e5ngmAk1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
| L [auth Al] | Ribosom_S12_S23 | e5ngmAl1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
| M [auth Am] | Ribosomal_S13_1 | e5ngmAm1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13_1 | ECOD (1.6) |
| O [auth Ao] | Ribosomal_S15_1 | e5ngmAo1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_1 | ECOD (1.6) |
| P [auth Ap] | Ribosomal_S16_1 | e5ngmAp1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: Ribosomal_S16_1 | ECOD (1.6) |
| Q [auth Aq] | Ribosomal_S17_1 | e5ngmAq1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
| R [auth Ar] | Ribosomal_S18 | e5ngmAr1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Ribosomal_S18 | ECOD (1.6) |
| S [auth As] | Ribosomal_S19 | e5ngmAs1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
| T [auth At] | Ribosomal_S20p | e5ngmAt1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: Ribosomal_S20p | ECOD (1.6) |
| U [auth Au] | Ribosomal_S21 | e5ngmAu1 | A: extended segments | X: 30S ribosomal protein S21 (From Topology) | H: 30S ribosomal protein S21 (From Topology) | T: 30S ribosomal protein S21 | F: Ribosomal_S21 | ECOD (1.6) |
| V [auth Av] | Ribosom_S30AE_C | e5ngmAv2 | A: a+b two layers | X: Ribosome-associated factor Y (From Topology) | H: Ribosome-associated factor Y (From Topology) | T: Ribosome-associated factor Y | F: Ribosom_S30AE_C | ECOD (1.6) |
| V [auth Av] | Ribosomal_S30AE | e5ngmAv1 | A: a+b two layers | X: dsRBD-like | H: Ribosome binding protein Y (YfiA homologue) (From Topology) | T: Ribosome binding protein Y (YfiA homologue) | F: Ribosomal_S30AE | ECOD (1.6) |
| Z [auth AD] | Ribosomal_L3 | e5ngmAD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
| AA [auth AE] | Ribosomal_L4 | e5ngmAE1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
| BA [auth AF] | Ribosomal_L5_C | e5ngmAF1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
| DA [auth AH] | Ribosomal_L13 | e5ngmAH1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
| EA [auth AI] | Ribosomal_L14 | e5ngmAI1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
| FA [auth AJ] | Ribosomal_L27A | e5ngmAJ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
| GA [auth AK] | Ribosomal_L16 | e5ngmAK1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
| HA [auth AL] | Ribosomal_L17_1 | e5ngmAL1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: Ribosomal_L17_1 | ECOD (1.6) |
| IA [auth AM] | Ribosomal_L18p | e5ngmAM1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L18p | ECOD (1.6) |
| JA [auth AN] | Ribosomal_L19 | e5ngmAN1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
| KA [auth AO] | Ribosomal_L20 | e5ngmAO1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
| LA [auth AP] | Ribosomal_L21p | e5ngmAP1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
| OA [auth AS] | ribosomal_L24_1 | e5ngmAS1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24_1 | ECOD (1.6) |
| QA [auth AU] | Ribosomal_L27 | e5ngmAU1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
| RA [auth AV] | Ribosomal_L28 | e5ngmAV1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: Ribosomal_L28 | ECOD (1.6) |
| SA [auth AW] | Ribosomal_L29 | e5ngmAW1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
| TA [auth AX] | Ribosomal_L30 | e5ngmAX1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30 | ECOD (1.6) |
| UA [auth AY] | Ribosomal_L31 | e5ngmAY1 | A: few secondary structure elements | X: Ribosomal protein L31p (From Topology) | H: Ribosomal protein L31p (From Topology) | T: Ribosomal protein L31p | F: Ribosomal_L31 | ECOD (1.6) |
| YA [auth A3] | Ribosomal_L35p | e5ngmA31 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: Ribosomal_L35p | ECOD (1.6) |
| I [auth Ai] | Ribosomal_S9 | e5ngmAi1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
| F [auth Af] | Ribosomal_S6 | e5ngmAf1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: Ribosomal_S6 | ECOD (1.6) |
| ZA [auth A4] | Ribosomal_L36 | e5ngmA41 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: Ribosomal_L36 | ECOD (1.6) |
| XA [auth A2] | Ribosomal_L34 | e5ngmA21 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: Ribosomal_L34 | ECOD (1.6) |
| WA [auth A1] | Ribosomal_L33 | e5ngmA11 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L33 | ECOD (1.6) |
| VA [auth AZ] | Ribosomal_L32p | e5ngmAZ1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L32p | ECOD (1.6) |
| PA [auth AT] | Ribosomal_L25p | e5ngmAT1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
| NA [auth AR] | Ribosomal_L23_2 | e5ngmAR1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
| MA [auth AQ] | Ribosomal_L22 | e5ngmAQ1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
| CA [auth AG] | Ribosomal_L6 | e5ngmAG2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
| CA [auth AG] | Ribosomal_L6_1 | e5ngmAG1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_1 | ECOD (1.6) |
| Y [auth AC] | Ribosomal_L2_1 | e5ngmAC2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
| Y [auth AC] | Ribosomal_L2_C | e5ngmAC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C | ECOD (1.6) |
| N [auth An] | Ribosomal_S14 | e5ngmAn1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14 | ECOD (1.6) |
| J [auth Aj] | Ribosomal_S10 | e5ngmAj1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| X [auth AB] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| Z [auth AD] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| Z [auth AD] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| Z [auth AD] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| AA [auth AE] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| AA [auth AE] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| AA [auth AE] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| BA [auth AF] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| BA [auth AF] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| BA [auth AF] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| DA [auth AH] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| DA [auth AH] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| EA [auth AI] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| EA [auth AI] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| FA [auth AJ] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| FA [auth AJ] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| GA [auth AK] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| GA [auth AK] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| HA [auth AL] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| HA [auth AL] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| IA [auth AM] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| JA [auth AN] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| JA [auth AN] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| KA [auth AO] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| KA [auth AO] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| LA [auth AP] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| LA [auth AP] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| OA [auth AS] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| OA [auth AS] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| QA [auth AU] | PF01165 | Ribosomal protein S21 (Ribosomal_S21) | Ribosomal protein S21 | - | Family |
| RA [auth AV] | PF02482 | Sigma 54 modulation protein / S30EA ribosomal protein (Ribosomal_S30AE) | Sigma 54 modulation protein / S30EA ribosomal protein | - | Family |
| RA [auth AV] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| SA [auth AW] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| TA [auth AX] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| UA [auth AY] | PF01197 | Ribosomal protein L31 (Ribosomal_L31) | Ribosomal protein L31 | - | Family |
| YA [auth A3] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| ZA [auth A4] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
| XA [auth A2] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| WA [auth A1] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| VA [auth AZ] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| PA [auth AT] | PF01649 | Ribosomal protein S20 (Ribosomal_S20p) | Ribosomal protein S20 | - | Family |
| NA [auth AR] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| MA [auth AQ] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| MA [auth AQ] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| CA [auth AG] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| CA [auth AG] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| Y [auth AC] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| Y [auth AC] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| Y [auth AC] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| Y [auth AC] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |














