6BPZ | pdb_00006bpz

Structure of the mechanically activated ion channel Piezo1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPiezo channel C-terminal extracellular domain-like 8054044 3002270 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPiezo channel C-terminal extracellular domain-like 8054044 3002270 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPiezo channel C-terminal extracellular domain-like 8054044 3002270 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APiezo_RRas_bdge6bpzA1 A: beta sandwichesX: Piezo CTL2 domain (From Topology)H: Piezo CTL2 domain (From Topology)T: Piezo CTL2 domainF: Piezo_RRas_bdgECOD (1.6)
BPiezo_RRas_bdge6bpzB1 A: beta sandwichesX: Piezo CTL2 domain (From Topology)H: Piezo CTL2 domain (From Topology)T: Piezo CTL2 domainF: Piezo_RRas_bdgECOD (1.6)
CPiezo_RRas_bdge6bpzC1 A: beta sandwichesX: Piezo CTL2 domain (From Topology)H: Piezo CTL2 domain (From Topology)T: Piezo CTL2 domainF: Piezo_RRas_bdgECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF15917Piezo TM25-28 (Piezo_TM25-28)Piezo TM25-28Piezo is a family of proteins that form mechanosensitive non-specific cation channels whose conductance is higher for Li+, intermediate for Na+ and lowest for Li+. Divalent ions except for Mn2+ permeate the channel but more slowly than monovalent ion ...Piezo is a family of proteins that form mechanosensitive non-specific cation channels whose conductance is higher for Li+, intermediate for Na+ and lowest for Li+. Divalent ions except for Mn2+ permeate the channel but more slowly than monovalent ions and can reduce K+ currents [1-4]. These channels have a homotrimeric three-blade propeller-shaped structure that use a cap-motion and plug-and-latch mechanism to gate their ion-conducting pathways [1-4]. Each protomer consists of 38 TM helices (referred to THUs) that form unusual non-planar blades, and an extracellular cap-like structure (Pfam:PF12166). This entry represents TM25-28, found in the central region of these proteins, following Pfam:PF24871 and associated with Pfam:PF12166 at the C-terminal.
Domain
A, B, C
PF12166Piezo non-specific cation channel, cap domain (Piezo_cap)Piezo non-specific cation channel, cap domainThis is an extracellular domain at the C-terminus of Piezo, or FAM38 mechanosensitive non-specific cation channel proteins [1,2]. Piezo is a family of proteins that form mechanosensitive non-specific cation channels whose conductance is higher for Li ...This is an extracellular domain at the C-terminus of Piezo, or FAM38 mechanosensitive non-specific cation channel proteins [1,2]. Piezo is a family of proteins that form mechanosensitive non-specific cation channels whose conductance is higher for Li+, intermediate for Na+ and lowest for Li+. Divalent ions except for Mn2+ permeate the channel but more slowly than monovalent ions and can reduce K+ currents [1-4]. These channels have a homotrimeric three-blade propeller-shaped structure that use a cap-motion and plug-and-latch mechanism to gate their ion-conducting pathways [2-4]. Each protomer consists of 38 TM helices that form unusual non-planar blades, and an extracellular cap-like structure, the latter represented in this entry [2-4,6]. This domain is embedded in the centre of the trimer and may control the transmembrane constriction site suggested to act as a transmembrane gate [6]. This domain adopts a distinctive beta-sandwich fold [2-6].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Piezo-type mechanosensitive ion channel component 1,Piezo-type mechanosensitive ion channel component 1,mouse Piezo1,Piezo-type mechanosensitive ion channel component 1,Piezo-type mechanosensitive ion channel component 1

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C
OPMTransmembraneAlpha-helical polytopicPiezo familyPiezo family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage