CryoEM structure of Ageratum Yellow Vein virus (AYVV)
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| S [auth H] | DUF5063 | e6f2sH1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: DUF5063 | ECOD (1.6) |
| Q [auth I] | DUF5063 | e6f2sI1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: DUF5063 | ECOD (1.6) |
| E [auth F] | DUF5063 | e6f2sF1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: DUF5063 | ECOD (1.6) |
| K [auth C] | DUF5063 | e6f2sC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: DUF5063 | ECOD (1.6) |
| U [auth G] | DUF5063 | e6f2sG1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: DUF5063 | ECOD (1.6) |
| O [auth J] | DUF5063 | e6f2sJ1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: DUF5063 | ECOD (1.6) |
| M [auth K] | DUF5063 | e6f2sK1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: DUF5063 | ECOD (1.6) |
| I [auth D] | DUF5063 | e6f2sD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: DUF5063 | ECOD (1.6) |
| G [auth E] | DUF5063 | e6f2sE1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: DUF5063 | ECOD (1.6) |
| C [auth B] | DUF5063 | e6f2sB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: DUF5063 | ECOD (1.6) |
| A | DUF5063 | e6f2sA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: DUF5063 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| S [auth H] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
| Q [auth I] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
| E [auth F] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
| K [auth C] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
| U [auth G] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
| O [auth J] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
| M [auth K] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
| G [auth E] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
| C [auth B] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| S [auth H] | PF00844 | Geminivirus coat protein/nuclear export factor BR1 family (Gemini_coat) | Geminivirus coat protein/nuclear export factor BR1 family | - | Family |
| Q [auth I] | PF00844 | Geminivirus coat protein/nuclear export factor BR1 family (Gemini_coat) | Geminivirus coat protein/nuclear export factor BR1 family | - | Family |
| PF00844 | Geminivirus coat protein/nuclear export factor BR1 family (Gemini_coat) | Geminivirus coat protein/nuclear export factor BR1 family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| S [auth H] | IPR000263 | Geminivirus AR1/BR1 coat protein | Family |
| S [auth H] | IPR029053 | Viral coat protein subunit | Homologous Superfamily |
| S [auth H] | IPR000650 | Geminivirus AR1 coat protein | Family |
| Q [auth I] | IPR000263 | Geminivirus AR1/BR1 coat protein | Family |
| Q [auth I] | IPR029053 | Viral coat protein subunit | Homologous Superfamily |
| Q [auth I] | IPR000650 | Geminivirus AR1 coat protein | Family |
| IPR000263 | Geminivirus AR1/BR1 coat protein | Family | |
| IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
| IPR000650 | Geminivirus AR1 coat protein | Family |














