6J40 | pdb_00006j40

Structure of C2S2M2-type PSII-FCPII supercomplex from diatom


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
EA [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8094731 3001547 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8094731 3001547 SCOP2B (2022-06-29)
NA [auth v]SCOP2B SuperfamilyCytochrome c 8094925 3000815 SCOP2B (2022-06-29)
P [auth V]SCOP2B SuperfamilyCytochrome c 8094925 3000815 SCOP2B (2022-06-29)
MA [auth u]SCOP2B SuperfamilyPsbU/PolX domain-like 8094223 3000893 SCOP2B (2022-06-29)
O [auth U]SCOP2B SuperfamilyPsbU/PolX domain-like 8094223 3000893 SCOP2B (2022-06-29)
M [auth O]SCOP2B SuperfamilyOMPA barrel-like 8095677 3000208 SCOP2B (2022-06-29)
KA [auth o]SCOP2B SuperfamilyOMPA barrel-like 8095677 3000208 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
GA [auth j]Bystine6j40j1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
I [auth J]Bystine6j40J1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
FA [auth i]Bystine6j40i1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
H [auth I]Bystine6j40I1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
EA [auth h]Bystine6j40h1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
G [auth H]Bystine6j40H1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
DA [auth f]Bystine6j40f1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
FBystine6j40F1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
CA [auth e]Bystine6j40e1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
EBystine6j40E1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
BA [auth d]Bystine6j40d1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
DBystine6j40D1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
CBystine6j40C1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
AA [auth c]Bystine6j40c1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
AB [auth 15]Bystine6j40151 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
BB [auth 16]Bystine6j40161 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
HB [auth 31]Bystine6j40311 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
JB [auth 33]Bystine6j40331 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
KB [auth 34]Bystine6j40341 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
MB [auth 36]Bystine6j40361 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
NB [auth 37]Bystine6j40371 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
OB [auth 38]Bystine6j40381 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
WA [auth 11]Bystine6j40111 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
XA [auth 12]Bystine6j40121 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
YA [auth 13]Bystine6j40131 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
ZA [auth 14]Bystine6j40141 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
LB [auth 35]Bystine6j40351 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
IB [auth 32]Bystine6j40321 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
DB [auth 18]Bystine6j40181 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
CB [auth 17]Bystine6j40171 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
SA [auth w]DUF5630e6j40w1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: DUF5630ECOD (develop294)
U [auth W]DUF5630e6j40W1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: DUF5630ECOD (develop294)
RA [auth q]Bystine6j40q1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
T [auth Q]Bystine6j40Q1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
BBystine6j40B1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
Z [auth b]Bystine6j40b1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
QA [auth z]Bystine6j40z1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
S [auth Z]Bystine6j40Z1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
PA [auth x]Bystine6j40x1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
R [auth X]Bystine6j40X1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
OA [auth y]Bystine6j40y1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
Q [auth Y]Bystine6j40Y1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
NA [auth v]Bystine6j40v1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
P [auth V]Bystine6j40V1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
MA [auth u]Bystine6j40u1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
O [auth U]Bystine6j40U1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
LA [auth t]Bystine6j40t1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
N [auth T]Bystine6j40T1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
M [auth O]Bystine6j40O1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
KA [auth o]Bystine6j40o1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
L [auth M]Bystine6j40M1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
JA [auth m]Bystine6j40m1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
IA [auth l]Bystine6j40l1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
K [auth L]Bystine6j40L1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
J [auth K]Bystine6j40K1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
HA [auth k]Bystine6j40k1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
ABystine6j40A1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)
Y [auth a]Bystine6j40a1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: BystinECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
GA [auth j],
I [auth J]
Photosystem II reaction center protein J---
FA [auth i],
H [auth I]
Photosystem II reaction center protein I---
EA [auth h],
G [auth H]
Photosystem II reaction center protein H
DA [auth f],
F
Cytochrome b559 subunit beta---
CA [auth e],
E
Cytochrome b559 subunit alpha---
BA [auth d],
D
Photosystem II reaction center protein D2---
AA [auth c],
C
Photosystem II chlorophyll protein CP43---
GB [auth 21],
RB [auth 41]
Fucoxanthin chlorophyll a/c-binding protein monomer 3---
FB [auth 20],
QB [auth 40]
Fucoxanthin chlorophyll a/c-binding protein monomer 2---
EB [auth 19],
PB [auth 39]
Fucoxanthin chlorophyll a/c-binding protein monomer 1---
Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1---
VA [auth 7],
X [auth 2]
Unknown protein 2---
UA [auth 6],
W [auth 1]
Unknown protein 1---
TA [auth 5],
V [auth 0]
Unknown protein 0---
SA [auth w],
U [auth W]
Photosystem II reaction center protein W---
RA [auth q],
T [auth Q]
Extrinsic protein in photosystem II- - -
B,
Z [auth b]
Photosystem II chlorophyll protein CP47---
QA [auth z],
S [auth Z]
Photosystem II reaction center protein Z---
PA [auth x],
R [auth X]
Photosystem II reaction center X protein-
OA [auth y],
Q [auth Y]
Photosystem II reaction center protein Ycf12---
NA [auth v],
P [auth V]
Cytochrome c-550
MA [auth u],
O [auth U]
Extrinsic protein in photosystem II-
LA [auth t],
N [auth T]
Photosystem II reaction center protein T---
KA [auth o],
M [auth O]
Extrinsic protein in photosystem II-
JA [auth m],
L [auth M]
Photosystem II reaction center protein M---
IA [auth l],
K [auth L]
Photosystem II reaction center protein L---
HA [auth k],
J [auth K]
Photosystem II reaction center protein K---
A,
Y [auth a]
Photosystem II reaction center protein D1---