6KKS | pdb_00006kks

Structural insights into target DNA recognition by R2R3-type MYB transcription factor

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Myb_DNA-binding	e6kksA2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Myb_DNA-binding	ECOD (1.6)
A	Myb_DNA-binding_2	e6kksA1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Myb_DNA-binding_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.60	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Homeodomain-like	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00249	Myb-like DNA-binding domain (Myb_DNA-binding)	Myb-like DNA-binding domain	This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	DNA (5'-D(CPGPAPAPAPAPTPGPCPGPGPTPTPGPGPAPGPAPAPTP*T)-3')	-	-	-
B	DNA (5'-D(APAPAPTPTPCPTPCPCPAPAPCPCPGPCPAPTPTPTPTP*C)-3')	-	-	-
A	Transcription factor WER	DNA binding binding nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	multicellular organismal process plant epidermal cell differentiation cellular developmental process plant epidermis development cell development multicellular organism development cell differentiation anatomical structure development cell maturation root development trichoblast differentiation system development developmental process plant organ development multicellular organismal process plant epidermal cell differentiation cellular developmental process plant epidermis development cell development multicellular organism development cell differentiation anatomical structure development cell maturation root development trichoblast differentiation system development developmental process plant organ development root morphogenesis root epidermal cell differentiation root hair cell differentiation developmental maturation tissue development plant organ morphogenesis anatomical structure morphogenesis trichoblast maturation anatomical structure maturation cellular process root system development cell fate commitment regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A	IPR015495	Myb transcription factor, plants	Family
A	IPR001005	SANT/Myb domain	Domain
A	IPR017930	Myb domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.