6M2M | pdb_00006m2m

A role for histone chaperone OsChz1 in histone recognition and deposition

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L [auth B]	d6m2mb_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
K [auth L]	d6m2ml_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
J [auth H]	d6m2mh_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
I [auth J]	d6m2mj_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
H [auth F]	d6m2mf_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
D	d6m2md_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
G [auth K]	d6m2mk_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
F [auth I]	d6m2mi_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
E [auth G]	d6m2mg_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
C	d6m2mc_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
B [auth A]	d6m2ma_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
A [auth E]	d6m2me_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth B]	SCOP2B Superfamily	Core histone-like	8101747	3001387	SCOP2B (2022-06-29)
K [auth L]	SCOP2B Superfamily	Core histone-like	8101747	3001387	SCOP2B (2022-06-29)
J [auth H]	SCOP2B Superfamily	Core histone-like	8101747	3001387	SCOP2B (2022-06-29)
I [auth J]	SCOP2B Superfamily	Core histone-like	8101747	3001387	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Core histone-like	8101747	3001387	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Core histone-like	8101747	3001387	SCOP2B (2022-06-29)
G [auth K]	SCOP2B Superfamily	Core histone-like	8101485	3001387	SCOP2B (2022-06-29)
F [auth I]	SCOP2B Superfamily	Core histone-like	8101485	3001387	SCOP2B (2022-06-29)
E [auth G]	SCOP2B Superfamily	Core histone-like	8101485	3001387	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Core histone-like	8101485	3001387	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Core histone-like	8101485	3001387	SCOP2B (2022-06-29)
A [auth E]	SCOP2 Family	Nucleosome core histones	8101484	4000793	SCOP2 (2022-06-29)
A [auth E]	SCOP2 Superfamily	Core histone-like	8101485	3001387	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth B]	Histone	e6m2mB1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
K [auth L]	Histone	e6m2mL1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
J [auth H]	Histone	e6m2mH1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
I [auth J]	Histone	e6m2mJ1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
H [auth F]	Histone	e6m2mF1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
D	Histone	e6m2mD1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
G [auth K]	Histone_1	e6m2mK1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
F [auth I]	Histone_1	e6m2mI1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
E [auth G]	Histone_1	e6m2mG1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
C	Histone_1	e6m2mC1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
B [auth A]	Histone_1	e6m2mA1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
A [auth E]	Histone_1	e6m2mE1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
K [auth L]	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], B [auth A], C, E [auth G], F [auth I], A [auth E], B [auth A], C, E [auth G], F [auth I], G [auth K]	PF16211	C-terminus of histone H2A (Histone_H2A_C)	C-terminus of histone H2A	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M, N, O	Expressed protein	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
D, H [auth F], I [auth J], J [auth H], K [auth L], D, H [auth F], I [auth J], J [auth H], K [auth L], L [auth B]	Histone H2B.1	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle plastid cytoplasm protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle plastid cytoplasm intracellular membrane-bounded organelle chloroplast extracellular region nucleus
A [auth E], B [auth A], C, E [auth G], F [auth I], A [auth E], B [auth A], C, E [auth G], F [auth I], G [auth K]	Probable histone H2A.3	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle organelle membraneless organelle membrane-bounded organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
M, N, O	IPR019098	Histone chaperone domain CHZ	Domain
M, N, O	IPR014876	DEK, C-terminal	Domain
M, N, O	IPR037647	HIRA-interacting protein 3	Family
D, H [auth F], I [auth J], J [auth H], K [auth L], D, H [auth F], I [auth J], J [auth H], K [auth L], L [auth B]	IPR009072	Histone-fold	Homologous Superfamily
D, H [auth F], I [auth J], J [auth H], K [auth L], D, H [auth F], I [auth J], J [auth H], K [auth L], L [auth B]	IPR055333	Histone H2B, conserved site	Conserved Site
D, H [auth F], I [auth J], J [auth H], K [auth L], D, H [auth F], I [auth J], J [auth H], K [auth L], L [auth B]	IPR000558	Histone H2B	Family
D, H [auth F], I [auth J], J [auth H], K [auth L], D, H [auth F], I [auth J], J [auth H], K [auth L], L [auth B]	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
A [auth E], B [auth A], C, E [auth G], F [auth I], A [auth E], B [auth A], C, E [auth G], F [auth I], G [auth K]	IPR009072	Histone-fold	Homologous Superfamily
A [auth E], B [auth A], C, E [auth G], F [auth I], A [auth E], B [auth A], C, E [auth G], F [auth I], G [auth K]	IPR002119	Histone H2A	Family
A [auth E], B [auth A], C, E [auth G], F [auth I], A [auth E], B [auth A], C, E [auth G], F [auth I], G [auth K]	IPR032454	Histone H2A, C-terminal domain	Domain
A [auth E], B [auth A], C, E [auth G], F [auth I], A [auth E], B [auth A], C, E [auth G], F [auth I], G [auth K]	IPR032458	Histone H2A conserved site	Conserved Site
A [auth E], B [auth A], C, E [auth G], F [auth I], A [auth E], B [auth A], C, E [auth G], F [auth I], G [auth K]	IPR007125	Core Histone H2A/H2B/H3 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.