6NLH | pdb_00006nlh

Structure of human triose phosphate isomerase R189A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d6nlhh_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Triosephosphate isomerase (TIM)	Triosephosphate isomerase (TIM)	Triosephosphate isomerase	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d6nlhg_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Triosephosphate isomerase (TIM)	Triosephosphate isomerase (TIM)	Triosephosphate isomerase	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d6nlhf_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Triosephosphate isomerase (TIM)	Triosephosphate isomerase (TIM)	Triosephosphate isomerase	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E [auth D]	d6nlhd_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Triosephosphate isomerase (TIM)	Triosephosphate isomerase (TIM)	Triosephosphate isomerase	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D [auth C]	d6nlhc_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Triosephosphate isomerase (TIM)	Triosephosphate isomerase (TIM)	Triosephosphate isomerase	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth B]	d6nlhb_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Triosephosphate isomerase (TIM)	Triosephosphate isomerase (TIM)	Triosephosphate isomerase	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B [auth E]	d6nlhe_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Triosephosphate isomerase (TIM)	Triosephosphate isomerase (TIM)	Triosephosphate isomerase	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d6nlha_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Triosephosphate isomerase (TIM)	Triosephosphate isomerase (TIM)	Triosephosphate isomerase	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Triosephosphate isomerase (TIM)	8034694	3000190	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Triosephosphate isomerase (TIM)	8034694	3000190	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Triosephosphate isomerase (TIM)	8034694	3000190	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Triosephosphate isomerase (TIM)	8034694	3000190	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Triosephosphate isomerase (TIM)	8034694	3000190	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Triosephosphate isomerase (TIM)	8034694	3000190	SCOP2B (2022-06-29)
B [auth E]	SCOP2B Superfamily	Triosephosphate isomerase (TIM)	8034694	3000190	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Triosephosphate isomerase (TIM)	8034694	3000190	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	TIM	e6nlhH1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: TIM	ECOD (1.6)
G	TIM	e6nlhG1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: TIM	ECOD (1.6)
F	TIM	e6nlhF1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: TIM	ECOD (1.6)
E [auth D]	TIM	e6nlhD1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: TIM	ECOD (1.6)
D [auth C]	TIM	e6nlhC1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: TIM	ECOD (1.6)
C [auth B]	TIM	e6nlhB1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: TIM	ECOD (1.6)
B [auth E]	TIM	e6nlhE1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: TIM	ECOD (1.6)
A	TIM	e6nlhA1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: TIM	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
G	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
F	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
E [auth D]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
D [auth C]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
C [auth B]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
B [auth E]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth E], C [auth B], D [auth C], E [auth D], A, B [auth E], C [auth B], D [auth C], E [auth D], F, G, H	PF00121	Triosephosphate isomerase (TIM)	Triosephosphate isomerase	Triosephosphate isomerase (EC:5.3.1.1) (TIM) [1] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is ess ...	Triosephosphate isomerase (EC:5.3.1.1) (TIM) [1] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production, present in eukaryotes and prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [2,3]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure [4]. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth E], C [auth B], D [auth C], E [auth D], A, B [auth E], C [auth B], D [auth C], E [auth D], F, G, H	Triosephosphate isomerase	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity isomerase activity intramolecular oxidoreductase activity, interconverting aldoses and ketoses intramolecular oxidoreductase activity triose-phosphate isomerase activity catalytic activity carbon-oxygen lyase activity, acting on phosphates lyase activity methylglyoxal synthase activity carbon-oxygen lyase activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity isomerase activity intramolecular oxidoreductase activity, interconverting aldoses and ketoses intramolecular oxidoreductase activity triose-phosphate isomerase activity catalytic activity carbon-oxygen lyase activity, acting on phosphates lyase activity methylglyoxal synthase activity carbon-oxygen lyase activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding	methylglyoxal biosynthetic process small molecule biosynthetic process ketone metabolic process aldehyde biosynthetic process aldehyde metabolic process biosynthetic process metabolic process cellular process small molecule metabolic process ketone biosynthetic process methylglyoxal metabolic process ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration methylglyoxal biosynthetic process small molecule biosynthetic process ketone metabolic process aldehyde biosynthetic process aldehyde metabolic process biosynthetic process metabolic process cellular process small molecule metabolic process ketone biosynthetic process methylglyoxal metabolic process ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process nucleoside phosphate catabolic process organic acid metabolic process nucleobase-containing compound metabolic process glycolytic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process purine ribonucleotide catabolic process phosphorus metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyruvate metabolic process purine nucleoside diphosphate metabolic process primary metabolic process purine-containing compound catabolic process nucleotide metabolic process nucleobase-containing compound catabolic process nucleoside diphosphate metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process nucleoside triphosphate metabolic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process cellular respiration catabolic process ATP metabolic process energy derivation by oxidation of organic compounds purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process nucleotide catabolic process purine nucleoside triphosphate metabolic process purine nucleotide catabolic process carbohydrate metabolic process carbohydrate derivative catabolic process ADP catabolic process carboxylic acid metabolic process generation of precursor metabolites and energy purine-containing compound metabolic process ADP metabolic process organophosphate metabolic process purine ribonucleoside diphosphate metabolic process purine ribonucleoside diphosphate catabolic process monosaccharide metabolic process carbohydrate biosynthetic process hexose metabolic process monosaccharide biosynthetic process gluconeogenesis hexose biosynthetic process glucose metabolic process polyol metabolic process alcohol catabolic process polyol catabolic process alcohol metabolic process alditol catabolic process glycerol metabolic process glycerol catabolic process small molecule catabolic process glucose catabolic process to pyruvate hexose catabolic process glucose catabolic process monosaccharide catabolic process canonical glycolysis glycolytic process through glucose-6-phosphate glycolytic process through fructose-6-phosphate carbohydrate derivative biosynthetic process glyceraldehyde-3-phosphate metabolic process organophosphate biosynthetic process glyceraldehyde-3-phosphate biosynthetic process	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol intracellular organelle extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol intracellular organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth E], C [auth B], D [auth C], E [auth D], A, B [auth E], C [auth B], D [auth C], E [auth D], F, G, H	IPR035990	Triosephosphate isomerase superfamily	Homologous Superfamily
A, B [auth E], C [auth B], D [auth C], E [auth D], A, B [auth E], C [auth B], D [auth C], E [auth D], F, G, H	IPR000652	Triosephosphate isomerase	Family
A, B [auth E], C [auth B], D [auth C], E [auth D], A, B [auth E], C [auth B], D [auth C], E [auth D], F, G, H	IPR020861	Triosephosphate isomerase, active site	Active Site
A, B [auth E], C [auth B], D [auth C], E [auth D], A, B [auth E], C [auth B], D [auth C], E [auth D], F, G, H	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B [auth E], C [auth B], D [auth C], E [auth D], A, B [auth E], C [auth B], D [auth C], E [auth D], F, G, H	IPR022896	Triosephosphate isomerase, bacterial/eukaryotic	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth E], C [auth B], D [auth C], E [auth D], A, B [auth E], C [auth B], D [auth C], E [auth D], F, G, H	Pharos: P60174	triosephosphate isomerase deficiency hemolytic anemia congenital nonspherocytic hemolytic anemia esophageal squamous cell carcinoma Alzheimer disease squamous cell carcinoma familial hemolytic anemia Neuromuscular Manifestations inborn errors of metabolism osteoporosis lung adenocarcinoma neuromuscular disease lung cancer acquired metabolic disease oral cavity neoplasm triosephosphate isomerase deficiency hemolytic anemia congenital nonspherocytic hemolytic anemia esophageal squamous cell carcinoma Alzheimer disease squamous cell carcinoma familial hemolytic anemia Neuromuscular Manifestations inborn errors of metabolism osteoporosis lung adenocarcinoma neuromuscular disease lung cancer acquired metabolic disease oral cavity neoplasm plasma cell myeloma schizophrenia breast cancer non-small cell lung carcinoma ovarian cancer colorectal cancer giardiasis pancreatic intraductal papillary-mucinous neoplasm astrocytic tumor congenital anemia

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.