6UWT | pdb_00006uwt

Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric conformation

External Resource: Annotation

Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
N [auth G]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
M [auth F]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
L [auth E]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
K [auth D]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
J [auth C]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
I [auth B]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
H [auth A]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
G [auth N]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
F [auth M]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
E [auth L]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
D [auth K]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
C [auth J]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
B [auth I]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
A [auth H]	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G]	PF17475	Clostridial binary toxin B/anthrax toxin PA domain 2 (Binary_toxB_2)	Clostridial binary toxin B/anthrax toxin PA domain 2	This domain forms the middle beta sandwish domain in anthrax toxin.	Domain
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G]	PF17476	Clostridial binary toxin B/anthrax toxin PA domain 3 (Binary_toxB_3)	Clostridial binary toxin B/anthrax toxin PA domain 3	This entry represents the beta-grasp domain in anthrax protective antigen.	Domain
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G]	PF03495	Clostridial binary toxin B/anthrax toxin PA Ca-binding domain (Binary_toxB)	Clostridial binary toxin B/anthrax toxin PA Ca-binding domain	This domain is a calcium binding domain in the anthrax toxin protective antigen.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G]	ADP-ribosyltransferase binding component	cation binding ion binding binding metal ion binding small molecule binding transferase activity catalytic activity	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G]	IPR035331	Clostridial binary toxin B/anthrax toxin PA, domain 3	Domain
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G]	IPR011658	PA14 domain	Domain
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G]	IPR027439	Protective antigen, heptamerisation domain	Domain
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G]	IPR035088	Protective antigen, Ca-binding domain	Domain
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G]	IPR037149	Protective antigen, heptamerisation domain superfamily	Homologous Superfamily
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G]	IPR003896	Bacterial exotoxin B	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L] A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Adventitious Membrane Proteins: Beta-sheet Pore-forming Toxins/Attack Complexes	binary toxin translocase CDTb in asymmetric tetradecamer conformation

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.