6W1F | pdb_00006w1f

Crystal structure of Streptococcus thermophilus SHP pheromone receptor Rgg3 bound to DNA

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BHTH_3_2e6w1fB1 A: alpha arraysX: HTHH: HTHT: tetra-helical, lambda repressor-likeF: HTH_3_2ECOD (1.6)
BRGG_Cterme6w1fB2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RGG_CtermECOD (1.6)
AHTH_3_2e6w1fA1 A: alpha arraysX: HTHH: HTHT: tetra-helical, lambda repressor-likeF: HTH_3_2ECOD (1.6)
ARGG_Cterme6w1fA2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RGG_CtermECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF21259HTH-type transcriptional regulator Rgg, C-terminal domain (Rgg_C)HTH-type transcriptional regulator Rgg, C-terminal domain- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth F]DNA (30-MER)---
C [auth E]DNA (30-MER)---
A, B
Positive transcriptional regulator MutR family - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR053163HTH-type transcriptional regulator Rgg-likeFamily
A, B
IPR010057HTH-type transcriptional regulator Rgg, C-terminal domainDomain
A, B
IPR001387Cro/C1-type, helix-turn-helix domainDomain
A, B
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
A, B
IPR010982Lambda repressor-like, DNA-binding domain superfamilyHomologous Superfamily