6W3Z | pdb_00006w3z

Crystal Structure of Brugia malayi Deoxyhypusine synthase (DHPS)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6w3za_	Alpha and beta proteins (a/b)	DHS-like NAD/FAD-binding domain	DHS-like NAD/FAD-binding domain	Deoxyhypusine synthase, DHS	automated matches	Filarial nematode worm (Brugia malayi ) [TaxId: 6279 ],	SCOPe (2.08)
B	d6w3zb_	Alpha and beta proteins (a/b)	DHS-like NAD/FAD-binding domain	DHS-like NAD/FAD-binding domain	Deoxyhypusine synthase, DHS	automated matches	Filarial nematode worm (Brugia malayi ) [TaxId: 6279 ],	SCOPe (2.08)
C	d6w3zc_	Alpha and beta proteins (a/b)	DHS-like NAD/FAD-binding domain	DHS-like NAD/FAD-binding domain	Deoxyhypusine synthase, DHS	automated matches	Filarial nematode worm (Brugia malayi ) [TaxId: 6279 ],	SCOPe (2.08)
D	d6w3zd_	Alpha and beta proteins (a/b)	DHS-like NAD/FAD-binding domain	DHS-like NAD/FAD-binding domain	Deoxyhypusine synthase, DHS	automated matches	Filarial nematode worm (Brugia malayi ) [TaxId: 6279 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	DHS-like NAD/FAD-binding domain	8101217	3001728	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DHS-like NAD/FAD-binding domain	8101217	3001728	SCOP2B (2022-06-29)
C	SCOP2 Family	Deoxyhypusine synthase, DHS	8101216	4003886	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	DHS-like NAD/FAD-binding domain	8101217	3001728	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	DHS-like NAD/FAD-binding domain	8101217	3001728	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DS	e6w3zA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: DS	ECOD (1.6)
B	DS	e6w3zB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: DS	ECOD (1.6)
C	DS	e6w3zC1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: DS	ECOD (1.6)
D	DS	e6w3zD1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: DS	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.910.10	Alpha Beta	3-Layer(aba) Sandwich	Deoxyhypusine Synthase	Deoxyhypusine synthase	CATH (utative)
B	3.40.910.10	Alpha Beta	3-Layer(aba) Sandwich	Deoxyhypusine Synthase	Deoxyhypusine synthase	CATH (utative)
C	3.40.910.10	Alpha Beta	3-Layer(aba) Sandwich	Deoxyhypusine Synthase	Deoxyhypusine synthase	CATH (utative)
D	3.40.910.10	Alpha Beta	3-Layer(aba) Sandwich	Deoxyhypusine Synthase	Deoxyhypusine synthase	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01916	Deoxyhypusine synthase (DS)	Deoxyhypusine synthase	Eukaryotic initiation factor 5A (eIF-5A) contains an unusual amino acid, hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step in the post-translational formation of hypusine is catalysed by the enzyme deoxyhypusine synthase (DS) EC:1.1 ...	Eukaryotic initiation factor 5A (eIF-5A) contains an unusual amino acid, hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step in the post-translational formation of hypusine is catalysed by the enzyme deoxyhypusine synthase (DS) EC:1.1.1.249. The modified version of eIF-5A, and DS, are required for eukaryotic cell proliferation [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	BMA-DHPS-1, isoform a	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding deoxyhypusine synthase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036982	Deoxyhypusine synthase superfamily	Homologous Superfamily
A, B, C, D	IPR029035	DHS-like NAD/FAD-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR002773	Deoxyhypusine synthase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.