6X5G | pdb_00006x5g

Cocrystal structure of human CaMKII-alpha (CAMK2A)kinase domain and LRRC7 inhibitory domain

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062386	3000066	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Pkinase_Tyr	e6x5gA1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: Pkinase_Tyr	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00069	Protein kinase domain (Pkinase)	Protein kinase domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Leucine-rich repeat-containing protein 7	protein binding binding kinase binding enzyme binding protein kinase binding	regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development cell differentiation anatomical structure development positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of cellular process system development developmental process regulation of biological process plasma membrane bounded cell projection organization regulation of cell projection organization biological regulation nervous system development generation of neurons neuron development cellular process regulation of plasma membrane bounded cell projection organization cell adhesion cell-cell adhesion localization cellular localization receptor clustering macromolecule localization intracellular protein localization localization within membrane protein localization to membrane establishment of protein localization nitrogen compound transport protein localization to synapse transport neurotransmitter receptor transport to postsynaptic membrane establishment of protein localization to plasma membrane establishment of protein localization to postsynaptic membrane vesicle-mediated transport endocytic recycling neurotransmitter receptor transport to plasma membrane neurotransmitter receptor transport, endosome to plasma membrane establishment of localization in cell regulation of biological quality neurotransmitter receptor transport, endosome to postsynaptic membrane protein localization to cell periphery protein localization to postsynaptic membrane neurotransmitter receptor transport establishment of protein localization to membrane protein localization to plasma membrane intracellular transport establishment of localization protein-containing complex localization endosomal transport vesicle-mediated transport to the plasma membrane endosome to plasma membrane protein transport regulation of postsynaptic membrane neurotransmitter receptor levels protein transport protein localization to postsynapse protein localization to cell junction receptor localization to synapse intracellular protein transport establishment or maintenance of bipolar cell polarity establishment or maintenance of epithelial cell apical/basal polarity establishment or maintenance of apical/basal cell polarity establishment or maintenance of cell polarity	cell-cell junction adherens junction cellular anatomical structure anchoring junction cell junction extracellular region intracellular anatomical structure cytoplasm cytosol postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization organelle cell-cell junction adherens junction cellular anatomical structure anchoring junction cell junction extracellular region intracellular anatomical structure cytoplasm cytosol postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization organelle synapse asymmetric synapse membrane-bounded organelle vesicle lumen intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen intracellular membrane-bounded organelle secretory granule lumen endomembrane system intracellular organelle lumen intracellular organelle cytoplasmic vesicle organelle lumen specific granule lumen secretory granule secretory vesicle vesicle specific granule cell periphery basal part of cell membrane plasma membrane basal plasma membrane plasma membrane region basolateral plasma membrane axon cell projection main axon neuron projection axon initial segment plasma membrane bounded cell projection
A	Calcium/calmodulin-dependent protein kinase type II subunit alpha	protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity calcium/calmodulin-dependent protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein binding binding signaling receptor binding glutamate receptor binding protein serine kinase activity protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity calcium/calmodulin-dependent protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein binding binding signaling receptor binding glutamate receptor binding protein serine kinase activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding identical protein binding protein homodimerization activity protein dimerization activity calmodulin binding cation binding metal ion binding	cellular localization transport apoptotic mitochondrial changes cellular component organization mitochondrial membrane organization localization establishment of localization in cell cellular component organization or biogenesis regulation of biological quality regulation of mitochondrial membrane permeability mitochondrion organization mitochondrial transport membrane organization biological regulation cellular localization transport apoptotic mitochondrial changes cellular component organization mitochondrial membrane organization localization establishment of localization in cell cellular component organization or biogenesis regulation of biological quality regulation of mitochondrial membrane permeability mitochondrion organization mitochondrial transport membrane organization biological regulation intracellular transport cell death establishment of localization organelle organization cellular process regulation of membrane permeability regulation of mitochondrial membrane permeability involved in apoptotic process apoptotic process programmed cell death response to stimulus response to stress response to ischemia cellular response to stimulus cellular response to nitrogen compound response to angiotensin regulation of cellular process signaling response to peptide hormone angiotensin-activated signaling pathway cellular response to angiotensin cell communication cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus regulation of biological process response to endogenous stimulus response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical G protein-coupled receptor signaling pathway developmental process multicellular organismal process regulation of cell motility neuron migration cellular developmental process nervous system development regulation of neuron migration generation of neurons neurogenesis multicellular organism development cell differentiation regulation of locomotion anatomical structure development regulation of cell migration cell migration cell motility locomotion system development cellular response to interferon-beta response to peptide response to interferon-beta response to cytokine cellular response to cytokine stimulus regulation of signaling cannabinoid signaling pathway regulation of signal transduction endocannabinoid signaling pathway regulation of response to stimulus regulation of cell communication regulation of G protein-coupled receptor signaling pathway regulation of endocannabinoid signaling pathway positive regulation of cardiac muscle cell apoptotic process positive regulation of programmed cell death muscle cell apoptotic process positive regulation of striated muscle cell apoptotic process regulation of apoptotic process positive regulation of biological process regulation of cardiac muscle cell apoptotic process regulation of muscle cell apoptotic process regulation of programmed cell death positive regulation of apoptotic process cardiac muscle cell apoptotic process positive regulation of muscle cell apoptotic process regulation of striated muscle cell apoptotic process striated muscle cell apoptotic process positive regulation of cellular process regulation of localization modulation of chemical synaptic transmission synaptic signaling regulation of secretion by cell secretion by cell signal release trans-synaptic signaling neurotransmitter secretion regulation of transport secretion regulation of neurotransmitter transport export from cell cell-cell signaling neurotransmitter transport regulation of secretion chemical synaptic transmission signal release from synapse regulation of trans-synaptic signaling regulation of neurotransmitter secretion anterograde trans-synaptic signaling protein phosphorylation protein autophosphorylation phosphorylation primary metabolic process peptidyl-threonine autophosphorylation macromolecule modification phosphate-containing compound metabolic process peptidyl-amino acid modification metabolic process protein metabolic process macromolecule metabolic process peptidyl-threonine modification protein modification process phosphorus metabolic process peptidyl-threonine phosphorylation biological process involved in interspecies interaction between organisms immune response response to other organism defense response response to type II interferon defense response to symbiont response to external stimulus cellular response to type II interferon response to biotic stimulus immune system process defense response to other organism innate immune response response to external biotic stimulus positive regulation of DNA-binding transcription factor activity positive regulation of NF-kappaB transcription factor activity RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process positive regulation of molecular function nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of molecular function regulation of gene expression biosynthetic process regulation of DNA-binding transcription factor activity regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process regulation of neuronal synaptic plasticity regulation of synaptic plasticity dendritic spine development plasma membrane bounded cell projection organization cell projection organization cell development neuron projection development neuron differentiation dendrite development neuron development regulation of calcium ion transport positive regulation of calcium ion transport regulation of monoatomic ion transport calcium ion transport metal ion transport positive regulation of transport positive regulation of monoatomic ion transport monoatomic ion transport monoatomic cation transport regulation of metal ion transport mitotic cell cycle process cell cycle phase transition cell cycle G1/S transition of mitotic cell cycle cell cycle G1/S phase transition mitotic cell cycle mitotic cell cycle phase transition cell cycle process positive regulation of cell communication cell surface receptor signaling pathway via STAT positive regulation of signal transduction positive regulation of receptor signaling pathway via STAT positive regulation of receptor signaling pathway via JAK-STAT positive regulation of response to stimulus regulation of receptor signaling pathway via JAK-STAT cell surface receptor signaling pathway regulation of receptor signaling pathway via STAT cell surface receptor signaling pathway via JAK-STAT positive regulation of signaling protein localization to cell periphery regulation of protein localization protein localization to plasma membrane regulation of protein localization to cell periphery localization within membrane protein localization to membrane regulation of cellular localization macromolecule localization intracellular protein localization regulation of protein localization to plasma membrane regulation of protein localization to membrane long-term synaptic potentiation positive regulation of synaptic transmission negative regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity negative regulation of molecular function negative regulation of catalytic activity	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytosol nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytosol nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen cell projection neuron projection plasma membrane bounded cell projection protein-containing complex catalytic complex calcium- and calmodulin-dependent protein kinase complex intracellular protein-containing complex membrane intracellular vesicle cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane endocytic vesicle membrane vesicle organelle membrane endocytic vesicle neuron spine synapse dendritic spine somatodendritic compartment postsynapse cell junction dendrite dendritic tree postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR001611	Leucine-rich repeat	Repeat
B	IPR003591	Leucine-rich repeat, typical subtype	Repeat
B	IPR036034	PDZ superfamily	Homologous Superfamily
B	IPR050614	Synaptic Scaffolding LAP/MAGUK Families	Family
B	IPR055414	Disease resistance R13L4/SHOC-2-like, LRR domain	Domain
B	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
B	IPR001478	PDZ domain	Domain
A	IPR032710	NTF2-like domain superfamily	Homologous Superfamily
A	IPR017441	Protein kinase, ATP binding site	Binding Site
A	IPR013543	Calcium/calmodulin-dependent protein kinase II, association-domain	Domain
A	IPR000719	Protein kinase domain	Domain
A	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: Q96NW7	cocaine dependence cocaine abuse astrocytic tumor glioblastoma malignant ependymoma medulloblastoma pilocytic astrocytoma Sjogren syndrome atypical teratoid rhabdoid tumor Cocaine-Related Disorders hypertensive disorder malignant glioma oligodendroglioma pituitary cancer facioscapulohumeral muscular dystrophy cocaine dependence cocaine abuse astrocytic tumor glioblastoma malignant ependymoma medulloblastoma pilocytic astrocytoma Sjogren syndrome atypical teratoid rhabdoid tumor Cocaine-Related Disorders hypertensive disorder malignant glioma oligodendroglioma pituitary cancer facioscapulohumeral muscular dystrophy large cell medulloblastoma osteosarcoma primitive neuroectodermal tumor
A	Pharos: Q9UQM7	Wilson disease Hyperalgesia cocaine abuse cocaine dependence intellectual disability, autosomal dominant 53 malignant ependymoma mast cell leukemia acute myeloid leukemia ovarian cancer bipolar disorder glioblastoma large cell medulloblastoma malignant glioma oligodendroglioma aggressive systemic mastocytosis Wilson disease Hyperalgesia cocaine abuse cocaine dependence intellectual disability, autosomal dominant 53 malignant ependymoma mast cell leukemia acute myeloid leukemia ovarian cancer bipolar disorder glioblastoma large cell medulloblastoma malignant glioma oligodendroglioma aggressive systemic mastocytosis pilocytic astrocytoma astrocytic tumor ulcerative colitis colorectal cancer intellectual disability major depressive disorder malignant mesothelioma medulloblastoma osteosarcoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor depressive disorder

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.