6X6S | pdb_00006x6s

Cryo-EM Structure of the Helicobacter pylori OMC

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
BD [auth IY]	TrbI	e6x6sIY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
DC [auth GY]	TrbI	e6x6sGY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
FB [auth EY]	TrbI	e6x6sEY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
HA [auth CY]	TrbI	e6x6sCY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
J [auth AY]	TrbI	e6x6sAY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
JF [auth NY]	TrbI	e6x6sNY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
LE [auth LY]	TrbI	e6x6sLY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
ND [auth JY]	TrbI	e6x6sJY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
PC [auth HY]	TrbI	e6x6sHY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
RB [auth FY]	TrbI	e6x6sFY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
TA [auth DY]	TrbI	e6x6sDY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
V [auth BY]	TrbI	e6x6sBY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
XE [auth MY]	TrbI	e6x6sMY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
ZD [auth KY]	TrbI	e6x6sKY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AC [auth GT], BE [auth Kt], CB [auth ET], DD [auth It], EA [auth CT], AC [auth GT], BE [auth Kt], CB [auth ET], DD [auth It], EA [auth CT], FC [auth Gt], G [auth AT], GF [auth NT], HB [auth Et], IE [auth LT], JA [auth Ct], KD [auth JT], L [auth At], LF [auth Nt], MC [auth HT], NE [auth Lt], OB [auth FT], PD [auth Jt], QA [auth DT], RC [auth Ht], S [auth BT], TB [auth Ft], UE [auth MT], VA [auth Dt], WD [auth KT], X [auth Bt], YC [auth IT], ZE [auth Mt]	PF13117	Cag pathogenicity island protein Cag12 (Cag12)	Cag pathogenicity island protein Cag12	-	Family
BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], JF [auth NY], LE [auth LY], ND [auth JY], PC [auth HY], RB [auth FY], TA [auth DY], V [auth BY], XE [auth MY], ZD [auth KY]	PF03743	Bacterial conjugation TrbI-like protein (TrbI)	Bacterial conjugation TrbI-like protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AA], AA [auth CC], AB [auth EE], AF [auth NA], B [auth AB], A [auth AA], AA [auth CC], AB [auth EE], AF [auth NA], B [auth AB], BA [auth CD], BF [auth NB], C [auth AC], CA [auth CE], CE [auth LA], CF [auth NC], D [auth AD], DE [auth LB], DF [auth ND], E [auth AE], ED [auth JA], EE [auth LC], EF [auth NE], FD [auth JB], FE [auth LD], GC [auth HA], GD [auth JC], GE [auth LE], HC [auth HB], HD [auth JD], IB [auth FA], IC [auth HC], ID [auth JE], JB [auth FB], JC [auth HD], KA [auth DA], KB [auth FC], KC [auth HE], LA [auth DB], LB [auth FD], M [auth BA], MA [auth DC], MB [auth FE], N [auth BB], NA [auth DD], O [auth BC], OA [auth DE], OE [auth MA], P [auth BD], PE [auth MB], Q [auth BE], QD [auth KA], QE [auth MC], RD [auth KB], RE [auth MD], SC [auth IA], SD [auth KC], SE [auth ME], TC [auth IB], TD [auth KD], UB [auth GA], UC [auth IC], UD [auth KE], VB [auth GB], VC [auth ID], WA [auth EA], WB [auth GC], WC [auth IE], XA [auth EB], XB [auth GD], Y [auth CA], YA [auth EC], YB [auth GE], Z [auth CB], ZA [auth ED]	Type IV secretion system apparatus protein Cag3	-	-	-
AE [auth Km], BB [auth EM], CD [auth Im], DA [auth CM], EC [auth Gm], AE [auth Km], BB [auth EM], CD [auth Im], DA [auth CM], EC [auth Gm], F [auth AM], FF [auth NM], GB [auth Em], HE [auth LM], IA [auth Cm], JD [auth JM], K [auth Am], KF [auth Nm], LC [auth HM], ME [auth Lm], NB [auth FM], OD [auth Jm], PA [auth DM], QC [auth Hm], R [auth BM], SB [auth Fm], TE [auth MM], UA [auth Dm], VD [auth KM], W [auth Bm], XC [auth IM], YE [auth Mm], ZB [auth GM]	Type IV secretion system apparatus protein CagM	-	-	-
AC [auth GT], BE [auth Kt], CB [auth ET], DD [auth It], EA [auth CT], AC [auth GT], BE [auth Kt], CB [auth ET], DD [auth It], EA [auth CT], FC [auth Gt], G [auth AT], GF [auth NT], HB [auth Et], IE [auth LT], JA [auth Ct], KD [auth JT], L [auth At], LF [auth Nt], MC [auth HT], NE [auth Lt], OB [auth FT], PD [auth Jt], QA [auth DT], RC [auth Ht], S [auth BT], TB [auth Ft], UE [auth MT], VA [auth Dt], WD [auth KT], X [auth Bt], YC [auth IT], ZE [auth Mt]	Type IV secretion system apparatus protein CagT	-	-	-
BC [auth GU], DB [auth EU], FA [auth CU], H [auth AU], HF [auth NU], BC [auth GU], DB [auth EU], FA [auth CU], H [auth AU], HF [auth NU], JE [auth LU], LD [auth JU], NC [auth HU], PB [auth FU], RA [auth DU], T [auth BU], VE [auth MU], XD [auth KU], ZC [auth IU]	Unknown protein fragment	-	-	-
AD [auth IX], CC [auth GX], EB [auth EX], GA [auth CX], I [auth AX], AD [auth IX], CC [auth GX], EB [auth EX], GA [auth CX], I [auth AX], IF [auth NX], KE [auth LX], MD [auth JX], OC [auth HX], QB [auth FX], SA [auth DX], U [auth BX], WE [auth MX], YD [auth KX]	Type IV secretion system apparatus protein CagX	-	-	-
BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], JF [auth NY], LE [auth LY], ND [auth JY], PC [auth HY], RB [auth FY], TA [auth DY], V [auth BY], XE [auth MY], ZD [auth KY]	Cag pathogenicity island protein (Cag7)	-	-	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AC [auth GT], BE [auth Kt], CB [auth ET], DD [auth It], EA [auth CT], AC [auth GT], BE [auth Kt], CB [auth ET], DD [auth It], EA [auth CT], FC [auth Gt], G [auth AT], GF [auth NT], HB [auth Et], IE [auth LT], JA [auth Ct], KD [auth JT], L [auth At], LF [auth Nt], MC [auth HT], NE [auth Lt], OB [auth FT], PD [auth Jt], QA [auth DT], RC [auth Ht], S [auth BT], TB [auth Ft], UE [auth MT], VA [auth Dt], WD [auth KT], X [auth Bt], YC [auth IT], ZE [auth Mt]	IPR025264	Cag pathogenicity island protein Cag12	Family
BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], JF [auth NY], LE [auth LY], ND [auth JY], PC [auth HY], RB [auth FY], TA [auth DY], V [auth BY], XE [auth MY], ZD [auth KY]	IPR010853	DC-EC	Repeat
BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], JF [auth NY], LE [auth LY], ND [auth JY], PC [auth HY], RB [auth FY], TA [auth DY], V [auth BY], XE [auth MY], ZD [auth KY]	IPR029285	CagY type 1 repeat	Repeat
BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], JF [auth NY], LE [auth LY], ND [auth JY], PC [auth HY], RB [auth FY], TA [auth DY], V [auth BY], XE [auth MY], ZD [auth KY]	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], JF [auth NY], LE [auth LY], ND [auth JY], PC [auth HY], RB [auth FY], TA [auth DY], V [auth BY], XE [auth MY], ZD [auth KY]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.