6XMD | pdb_00006xmd

SM Protein Vps45 in Complex with Qa SNARE Tlg2 (1-310)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Syntaxin	e6xmdB1	A: alpha bundles	X: STAT-like	H: t-snare proteins (From Topology)	T: t-snare proteins	F: Syntaxin	ECOD (1.6)
A	Sec1_3rd	e6xmdA3	A: alpha complex topology	X: alpha-helical domain in sec1/munc18-like (SM) proteins (From Topology)	H: alpha-helical domain in sec1/munc18-like (SM) proteins (From Topology)	T: alpha-helical domain in sec1/munc18-like (SM) proteins	F: Sec1_3rd	ECOD (1.6)
A	Sec1_1st_1	e6xmdA2	A: a/b three-layered sandwiches	X: Rossmann-like domains in Sec1/munc18-like proteins (From Topology)	H: Rossmann-like domains in Sec1/munc18-like proteins (From Topology)	T: Rossmann-like domains in Sec1/munc18-like proteins	F: Sec1_1st_1	ECOD (1.6)
A	Sec1_2nd	e6xmdA1	A: a/b three-layered sandwiches	X: Rossmann-like domains in Sec1/munc18-like proteins (From Topology)	H: Rossmann-like domains in Sec1/munc18-like proteins (From Topology)	T: Rossmann-like domains in Sec1/munc18-like proteins	F: Sec1_2nd	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.2060	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Sec1/Munc18 (SM) protein, domain 1	CATH (utative)
A	3.90.830.10	Alpha Beta	Alpha-Beta Complex	Syntaxin Binding Protein 1	Chain A, domain 2	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF05739	SNARE domain (SNARE)	SNARE domain	Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE dom ...	Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. It is composed of about 70 amino acids arranged in an alpha-helical structure [1].	Domain
A	PF00995	Sec1 family (Sec1)	Sec1 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Tlg2 Qa SNARE	protein binding binding SNARE binding SNAP receptor activity protein-macromolecule adaptor activity molecular adaptor activity	membrane organization transport membrane fusion organelle membrane fusion establishment of localization vesicle-mediated transport vesicle organization cellular component organization organelle fusion localization organelle organization cellular process cellular component organization or biogenesis vesicle fusion membrane organization transport membrane fusion organelle membrane fusion establishment of localization vesicle-mediated transport vesicle organization cellular component organization organelle fusion localization organelle organization cellular process cellular component organization or biogenesis vesicle fusion cellular localization establishment of protein localization nitrogen compound transport intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport organelle localization by membrane tethering organelle localization vesicle docking membrane docking	SNARE complex protein-containing complex cellular anatomical structure intracellular anatomical structure membrane membrane protein complex cytoplasm membrane-bounded organelle Golgi membrane Golgi apparatus intracellular membrane-bounded organelle endomembrane system intracellular organelle bounding membrane of organelle SNARE complex protein-containing complex cellular anatomical structure intracellular anatomical structure membrane membrane protein complex cytoplasm membrane-bounded organelle Golgi membrane Golgi apparatus intracellular membrane-bounded organelle endomembrane system intracellular organelle bounding membrane of organelle organelle organelle membrane
A	Vps45	-	localization transport cellular process establishment of localization vesicle-mediated transport establishment of protein localization nitrogen compound transport protein transport macromolecule localization intracellular protein localization	cellular anatomical structure endomembrane system membrane-bounded organelle intracellular organelle intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR006012	Syntaxin/epimorphin, conserved site	Conserved Site
B	IPR000727	Target SNARE coiled-coil homology domain	Domain
B	IPR010989	SNARE	Homologous Superfamily
B	IPR045242	Syntaxin	Family
A	IPR027482	Sec1-like, domain 2	Homologous Superfamily
A	IPR043127	Sec1-like, domain 3a	Homologous Superfamily
A	IPR001619	Sec1-like protein	Family
A	IPR043154	Sec1-like, domain 1	Homologous Superfamily
A	IPR036045	Sec1-like superfamily	Homologous Superfamily

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	SNARE Protein Family	Sec1/Munc18-family (SM) Protein Vps45 in complex with Qa SNARE Tlg2

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.