Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
BB [auth XO] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8033689 | 3000995 | SCOP2B (2022-06-29) |
YA [auth XL] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072072 | 3000433 | SCOP2B (2022-06-29) |
XA [auth XK] | SCOP2B Superfamily | Ribosomal protein L13 | 8100460 | 3001134 | SCOP2B (2022-06-29) |
E [auth 4] | SCOP2B Superfamily | Ribosomal protein L36 | 8083324 | 3001346 | SCOP2B (2022-06-29) |
TA [auth XF] | SCOP2B Superfamily | Ribosomal protein L4 | 8080706 | 3001146 | SCOP2B (2022-06-29) |
OA [auth AY] | SCOP2B Superfamily | Mitochondrial 28S ribosomal protein S31-like | 8090914 | 3002471 | SCOP2B (2022-06-29) |
HA [auth AR] | SCOP2B Superfamily | Mitochondrial 28S ribosomal protein S22-like | 8051932 | 3002074 | SCOP2B (2022-06-29) |
GA [auth AQ] | SCOP2B Superfamily | Ribosomal protein S21 | 8053089 | 3002159 | SCOP2B (2022-06-29) |
AA [auth AK] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052599 | 3000068 | SCOP2B (2022-06-29) |
Z [auth AJ] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8095431 | 3000135 | SCOP2B (2022-06-29) |
Y [auth AI] | SCOP2B Superfamily | Translational machinery components | 8098948 | 3000571 | SCOP2B (2022-06-29) |
B [auth 1] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8075050 | 3001320 | SCOP2B (2022-06-29) |
R [auth AB] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063850 | 3001397 | SCOP2B (2022-06-29) |
L [auth A0] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8091481 | 3000334 | SCOP2B (2022-06-29) |
J [auth 9] | SCOP2B Superfamily | Mitochondrial ribosomal protein L27-like | 8053893 | 3002240 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
I [auth 8] | MRP-L28 | e6zsd81 | A: extended segments | X: Mitochondrial 54S ribosomal protein L28 (From Topology) | H: Mitochondrial 54S ribosomal protein L28 (From Topology) | T: Mitochondrial 54S ribosomal protein L28 | F: MRP-L28 | ECOD (1.6) |
NC [auth t6] | Ribosomal_L12_N_1 | e6zsdt61 | A: alpha duplicates or obligate multimers | X: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | T: Ribosomal protein L7/12, oligomerisation (N-terminal) domain | F: Ribosomal_L12_N_1 | ECOD (1.6) |
MC [auth t5] | Ribosomal_L12_N_1 | e6zsdt51 | A: alpha duplicates or obligate multimers | X: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | T: Ribosomal protein L7/12, oligomerisation (N-terminal) domain | F: Ribosomal_L12_N_1 | ECOD (1.6) |
LC [auth t4] | Ribosomal_L12_N_1 | e6zsdt41 | A: alpha duplicates or obligate multimers | X: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | T: Ribosomal protein L7/12, oligomerisation (N-terminal) domain | F: Ribosomal_L12_N_1 | ECOD (1.6) |
KC [auth t3] | Ribosomal_L12_N_1 | e6zsdt31 | A: alpha duplicates or obligate multimers | X: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | T: Ribosomal protein L7/12, oligomerisation (N-terminal) domain | F: Ribosomal_L12_N_1 | ECOD (1.6) |
JC [auth t2] | Ribosomal_L12_N_1 | e6zsdt21 | A: alpha duplicates or obligate multimers | X: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | T: Ribosomal protein L7/12, oligomerisation (N-terminal) domain | F: Ribosomal_L12_N_1 | ECOD (1.6) |
IC [auth t1] | Ribosomal_L12_N_1 | e6zsdt11 | A: alpha duplicates or obligate multimers | X: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | T: Ribosomal protein L7/12, oligomerisation (N-terminal) domain | F: Ribosomal_L12_N_1 | ECOD (1.6) |
HC [auth s] | PDCD9 | e6zsds1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PDCD9 | ECOD (1.6) |
DC [auth r] | Ribosomal_S18 | e6zsdr1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Ribosomal_S18 | ECOD (1.6) |
BC [auth p] | RF-1_N | e6zsdp1 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: RF-1_N | ECOD (1.6) |
H [auth 7] | TGS | e6zsd71 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: TGS | ECOD (1.6) |
H [auth 7] | tRNA_SAD | e6zsd72 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: ThrRS/AlaRS editing domain | F: tRNA_SAD | ECOD (1.6) |
AC [auth o] | MRP-63 | e6zsdo1 | A: extended segments | X: Mitoribosomal protein mL63 (From Topology) | H: Mitoribosomal protein mL63 (From Topology) | T: Mitoribosomal protein mL63 | F: MRP-63 | ECOD (1.6) |
ZB [auth m] | Mitoc_L55 | e6zsdm1 | A: few secondary structure elements | X: Ribosomal protein L31p (From Topology) | H: Ribosomal protein L31p (From Topology) | T: Ribosomal protein L31p | F: Mitoc_L55 | ECOD (1.6) |
XB [auth k] | MRP_L53 | e6zsdk1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: MRP_L53 | ECOD (1.6) |
WB [auth j] | EUF08791 | e6zsdj1 | A: extended segments | X: Mitoribosomal protein mL52 (From Topology) | H: Mitoribosomal protein mL52 (From Topology) | T: Mitoribosomal protein mL52 | F: EUF08791 | ECOD (1.6) |
VB [auth i] | MRP-L51 | e6zsdi1 | A: alpha bundles | X: Long alpha-hairpin | H: Mitoribosomal protein mL51 (From Topology) | T: Mitoribosomal protein mL51 | F: MRP-L51 | ECOD (1.6) |
UB [auth h] | Ribosomal_L50 | e6zsdh1 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: Ribosomal_L50 | ECOD (1.6) |
TB [auth g] | Img2 | e6zsdg1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: eIF1-like (From Topology) | T: eIF1-like | F: Img2 | ECOD (1.6) |
SB [auth f] | Ribosomal_S10_2 | e6zsdf1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10_2 | ECOD (1.6) |
RB [auth e] | MRP-L46 | e6zsde1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: MRP-L46 | ECOD (1.6) |
G [auth 6] | PBP | e6zsd61 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: PBP | ECOD (1.6) |
QB [auth d] | Tim44 | e6zsdd1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: Tim44 | ECOD (1.6) |
PB [auth c] | Ribonucleas_3_3 | e6zsdc2 | A: alpha arrays | X: RNase III catalytic domain-like (From Topology) | H: RNase III catalytic domain-like (From Topology) | T: RNase III catalytic domain-like | F: Ribonucleas_3_3 | ECOD (1.6) |
PB [auth c] | dsrm | e6zsdc1 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: dsrm | ECOD (1.6) |
OB [auth b] | L51_S25_CI-B8 | e6zsdb1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: L51_S25_CI-B8 | ECOD (1.6) |
NB [auth a] | MRP-S32 | e6zsda1 | A: extended segments | X: Mitoribosomal protein mL42 (From Topology) | H: Mitoribosomal protein mL42 (From Topology) | T: Mitoribosomal protein mL42 | F: MRP-S32 | ECOD (1.6) |
MB [auth XZ] | Ribosomal_L30 | e6zsdXZ1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30 | ECOD (1.6) |
LB [auth XY] | MRP-L47 | e6zsdXY1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: MRP-L47 | ECOD (1.6) |
KB [auth XX] | Ribosomal_L28_1 | e6zsdXX1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: Ribosomal_L28_1 | ECOD (1.6) |
JB [auth XW] | Ribosomal_L27 | e6zsdXW1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
IB [auth XV] | ribosomal_L24_1 | e6zsdXV1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24_1 | ECOD (1.6) |
HB [auth XU] | Ribosomal_L23_2 | e6zsdXU1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
F [auth 5] | PDCD9 | e6zsd51 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PDCD9 | ECOD (1.6) |
GB [auth XT] | Ribosomal_L22 | e6zsdXT1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
FB [auth XS] | Ribosomal_L21p | e6zsdXS1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
EB [auth XR] | Ribosomal_L20 | e6zsdXR1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
DB [auth XQ] | Ribosomal_L19 | e6zsdXQ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
CB [auth XP] | Ribosomal_L18p | e6zsdXP1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L18p | ECOD (1.6) |
BB [auth XO] | Ribosomal_L17 | e6zsdXO1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: Ribosomal_L17 | ECOD (1.6) |
AB [auth XN] | Ribosomal_L16 | e6zsdXN1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
ZA [auth XM] | Ribosomal_L27A | e6zsdXM1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
YA [auth XL] | Ribosomal_L14 | e6zsdXL1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
XA [auth XK] | Ribosomal_L13 | e6zsdXK1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
E [auth 4] | Ribosomal_L36 | e6zsd41 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: Ribosomal_L36 | ECOD (1.6) |
WA [auth XJ] | Ribosomal_L11 | e6zsdXJ1 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: Ribosomal_L11 | ECOD (1.6) |
WA [auth XJ] | Ribosomal_L11_N | e6zsdXJ2 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: Ribosomal_L11_N | ECOD (1.6) |
UA [auth XH] | Ribosomal_L9_N_1 | e6zsdXH1 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: Ribosomal_L9_N_1 | ECOD (1.6) |
TA [auth XF] | Ribosomal_L4 | e6zsdXF1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
SA [auth XE] | Ribosomal_L3 | e6zsdXE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
RA [auth XD] | Ribosomal_L2 | e6zsdXD2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2 | ECOD (1.6) |
RA [auth XD] | Ribosomal_L2_C | e6zsdXD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C | ECOD (1.6) |
PA [auth AZ] | MRP-S33 | e6zsdAZ1 | A: extended segments | X: Mitoribosomal protein mS33 (From Topology) | H: Mitoribosomal protein mS33 (From Topology) | T: Mitoribosomal protein mS33 | F: MRP-S33 | ECOD (1.6) |
OA [auth AY] | MRP-S31 | e6zsdAY1 | A: extended segments | X: Mitoribosomal protein mS31 (From Topology) | H: Mitoribosomal protein mS31 (From Topology) | T: Mitoribosomal protein mS31 | F: MRP-S31 | ECOD (1.6) |
NA [auth AX] | DAP3_C,DAP3_N | e6zsdAX1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DAP3_C,DAP3_N | ECOD (1.6) |
D [auth 3] | Ribosomal_L35p | e6zsd31 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: Ribosomal_L35p | ECOD (1.6) |
MA [auth AW] | MRP-S35 | e6zsdAW1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: MRP-S35 | ECOD (1.6) |
LA [auth AV] | MRP-S27 | e6zsdAV1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MRP-S27 | ECOD (1.6) |
KA [auth AU] | MRP-S26 | e6zsdAU1 | A: extended segments | X: Mitoribosomal protein mS26 (From Topology) | H: Mitoribosomal protein mS26 (From Topology) | T: Mitoribosomal protein mS26 | F: MRP-S26 | ECOD (1.6) |
JA [auth AT] | L51_S25_CI-B8 | e6zsdAT1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: L51_S25_CI-B8 | ECOD (1.6) |
IA [auth AS] | MRP-S23 | e6zsdAS1 | A: alpha arrays | X: RuvA-C | H: Mitoribosomal protein mS23 (From Topology) | T: Mitoribosomal protein mS23 | F: MRP-S23 | ECOD (1.6) |
HA [auth AR] | MRP-S22 | e6zsdAR1 | A: a+b complex topology | X: Mitoribosomal protein mS22 (From Topology) | H: Mitoribosomal protein mS22 (From Topology) | T: Mitoribosomal protein mS22 | F: MRP-S22 | ECOD (1.6) |
GA [auth AQ] | Ribosomal_S21_2 | e6zsdAQ1 | A: extended segments | X: 30S ribosomal protein S21 (From Topology) | H: 30S ribosomal protein S21 (From Topology) | T: 30S ribosomal protein S21 | F: Ribosomal_S21_2 | ECOD (1.6) |
FA [auth AP] | Ribosomal_S18 | e6zsdAP1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Ribosomal_S18 | ECOD (1.6) |
EA [auth AO] | Ribosomal_S18 | e6zsdAO1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Ribosomal_S18 | ECOD (1.6) |
DA [auth AN] | Ribosomal_S17_1 | e6zsdAN1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
C [auth 2] | Ribosomal_L34 | e6zsd21 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: Ribosomal_L34 | ECOD (1.6) |
CA [auth AM] | Ribosomal_S16 | e6zsdAM1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: Ribosomal_S16 | ECOD (1.6) |
BA [auth AL] | Ribosomal_S15_1 | e6zsdAL1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_1 | ECOD (1.6) |
AA [auth AK] | Ribosomal_S14_1 | e6zsdAK1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_1 | ECOD (1.6) |
Z [auth AJ] | Ribosom_S12_S23 | e6zsdAJ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
Y [auth AI] | Ribosomal_S11 | e6zsdAI1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
X [auth AH] | Ribosomal_S10_2 | e6zsdAH1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10_2 | ECOD (1.6) |
W [auth AG] | Ribosomal_S9 | e6zsdAG1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
V [auth AF] | Ribosomal_S7 | e6zsdAF1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7 | ECOD (1.6) |
U [auth AE] | Ribosomal_S6_1 | e6zsdAE1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: Ribosomal_S6_1 | ECOD (1.6) |
T [auth AD] | Ribosomal_S5_C | e6zsdAD2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C | ECOD (1.6) |
T [auth AD] | Ribosomal_S5_1 | e6zsdAD3 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5_1 | ECOD (1.6) |
T [auth AD] | KOG2646 | e6zsdAD1 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: KOG2646 | ECOD (1.6) |
B [auth 1] | Ribosomal_L33 | e6zsd11 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L33 | ECOD (1.6) |
S [auth AC] | MRP-S24 | e6zsdAC1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: MRP-S24 | ECOD (1.6) |
R [auth AB] | Ribosomal_S2_1 | e6zsdAB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2_1 | ECOD (1.6) |
O [auth A3] | DUF1713 | e6zsdA31 | A: extended segments | X: Mitoribosomal protein mS38 (From Topology) | H: Mitoribosomal protein mS38 (From Topology) | T: Mitoribosomal protein mS38 | F: DUF1713 | ECOD (1.6) |
N [auth A2] | KOG4695 | e6zsdA21 | A: few secondary structure elements | X: p8-MTCP1-related (From Topology) | H: p8-MTCP1-related (From Topology) | T: p8-MTCP1-related | F: KOG4695 | ECOD (1.6) |
M [auth A1] | F_UNCLASSIFIED | e6zsdA11 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth A0] | MRP-S34 | e6zsdA01 | A: beta barrels | X: SH3 | H: Mitoribosomal protein mS34 (From Topology) | T: Mitoribosomal protein mS34 | F: MRP-S34 | ECOD (1.6) |
J [auth 9] | MRP-L27 | e6zsd91 | A: extended segments | X: Mitochondrial 54S ribosomal protein L27 (From Topology) | H: Mitochondrial 54S ribosomal protein L27 (From Topology) | T: Mitochondrial 54S ribosomal protein L27 | F: MRP-L27 | ECOD (1.6) |
A [auth 0] | KOG4080 | e6zsd01 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: KOG4080 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
G [auth 6] | PF01161 | Phosphatidylethanolamine-binding protein (PBP) | Phosphatidylethanolamine-binding protein | Domain | |
MB [auth XZ] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
LB [auth XY] | PF06984 | Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47) | Mitochondrial 39-S ribosomal protein L47 (MRP-L47) | - | Family |
KB [auth XX] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
IB [auth XV] | PF17136 | Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) | Ribosomal proteins 50S L24/mitochondrial 39S L24 | - | Family |
IB [auth XV] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
HB [auth XU] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
F [auth 5] | PF07147 | Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9) | Mitochondrial 28S ribosomal protein S30 (PDCD9) | - | Family |
GB [auth XT] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
FB [auth XS] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
EB [auth XR] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
DB [auth XQ] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
CB [auth XP] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
BB [auth XO] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
AB [auth XN] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
ZA [auth XM] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
YA [auth XL] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
XA [auth XK] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
E [auth 4] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
WA [auth XJ] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
WA [auth XJ] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
VA [auth XI] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
UA [auth XH] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
TA [auth XF] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
SA [auth XE] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
RA [auth XD] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
RA [auth XD] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
PA [auth AZ] | PF08293 | Mitochondrial ribosomal subunit S27 (MRP-S33) | Mitochondrial ribosomal subunit S27 | - | Family |
NA [auth AX] | PF10236 | Mitochondrial ribosomal death-associated protein 3 (DAP3) | Mitochondrial ribosomal death-associated protein 3 | - | Family |
D [auth 3] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
KA [auth AU] | PF14943 | Mitochondrial ribosome subunit S26 (MRP-S26) | Mitochondrial ribosome subunit S26 | - | Family |
JA [auth AT] | PF05047 | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8) | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain | The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ... | Domain |
IA [auth AS] | PF10484 | Mitochondrial ribosomal protein S23 (MRP-S23) | Mitochondrial ribosomal protein S23 | - | Family |
HA [auth AR] | PF10245 | Mitochondrial 28S ribosomal protein S22 (MRP-S22) | Mitochondrial 28S ribosomal protein S22 | - | Family |
GA [auth AQ] | PF01165 | Ribosomal protein S21 (Ribosomal_S21) | Ribosomal protein S21 | - | Family |
FA [auth AP] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
EA [auth AO] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
DA [auth AN] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
C [auth 2] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
CA [auth AM] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
BA [auth AL] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
AA [auth AK] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
Z [auth AJ] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
Y [auth AI] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
X [auth AH] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
W [auth AG] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
V [auth AF] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
U [auth AE] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
T [auth AD] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
T [auth AD] | PF21251 | Small ribosomal subunit protein uS5m, N-terminal (Ribosomal_uS5m_N) | Small ribosomal subunit protein uS5m, N-terminal | This entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the m ... | Domain |
T [auth AD] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
S [auth AC] | PF14955 | Mitochondrial ribosome subunit S24 (MRP-S24) | Mitochondrial ribosome subunit S24 | - | Family |
R [auth AB] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
P [auth A4] | PF13812 | Pentatricopeptide repeat domain (PPR_3) | Pentatricopeptide repeat domain | - | Repeat |
P [auth A4] | PF22330 | Small ribosomal subunit protein mS39, PPR (Rib_mS39_PPR) | Small ribosomal subunit protein mS39, PPR | - | Repeat |
N [auth A2] | PF06747 | CHCH domain (CHCH) | CHCH domain | we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extende ... | Domain |
M [auth A1] | PF10213 | Mitochondrial ribosomal subunit protein (MRP-S28) | Mitochondrial ribosomal subunit protein | - | Family |
L [auth A0] | PF16053 | Mitochondrial 28S ribosomal protein S34 (MRP-S34) | Mitochondrial 28S ribosomal protein S34 | - | Family |
A [auth 0] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
OC [auth A] | 004 | |
OC [auth A] | DBB | AA0112 :  (2S,3S,2'R)-3-methyllanthionine MOD:00121 | : 
OC [auth A] | MHT | AA0112 | : 
OC [auth A] | MHU | Parent Component: PHE :  AA0112 |
OC [auth A] | MHV | AA0112 | : 
OC [auth A] | MHW | AA0112 | : 
GC [auth r4] | P5P | Parent Component: A :  AA0112 |
GC [auth r4] | Y5P | AA0112 | : 
FC [auth r3] | P5P | Parent Component: A :  AA0112 |
FC [auth r3] | Y5P | AA0112 | : 
EC [auth r1] | Y5P | AA0112 | :