7AB8 | pdb_00007ab8

Crystal structure of a GDNF-GFRalpha1 complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d7ab8b_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	Transforming growth factor (TGF)-beta	automated matches	Zebrafish (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Cystine-knot cytokines	8102212	3000846	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	TGF_beta	e7ab8B1	A: few secondary structure elements	X: Cystine-knot cytokines (From Topology)	H: Cystine-knot cytokines (From Topology)	T: Cystine-knot cytokines	F: TGF_beta	ECOD (1.6)
A	GDNF	e7ab8A2	A: alpha superhelices	X: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like	H: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA	T: GDNF receptor	F: GDNF	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF00019	Transforming growth factor beta like domain (TGF_beta)	Transforming growth factor beta like domain		Domain
A	PF02351	GDNF/GAS1 domain (GDNF)	GDNF/GAS1 domain	This cysteine rich domain is found in multiple copies in GNDF and GAS1 proteins. GDNF and neurturin (NTN) receptors are potent survival factors for sympathetic, sensory and central nervous system neurons [2]. GDNF and neurturin promote neuronal surv ...	This cysteine rich domain is found in multiple copies in GNDF and GAS1 proteins. GDNF and neurturin (NTN) receptors are potent survival factors for sympathetic, sensory and central nervous system neurons [2]. GDNF and neurturin promote neuronal survival by signaling through similar multicomponent receptors that consist of a common receptor tyrosine kinase and a member of a GPI-linked family of receptors that determines ligand specificity [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Glial cell line-derived neurotrophic factor	protein binding binding molecular function activator activity signaling receptor binding molecular function regulator activity signaling receptor regulator activity growth factor activity receptor ligand activity signaling receptor activator activity protein serine/threonine kinase activity MAP kinase kinase kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity protein binding binding molecular function activator activity signaling receptor binding molecular function regulator activity signaling receptor regulator activity growth factor activity receptor ligand activity signaling receptor activator activity protein serine/threonine kinase activity MAP kinase kinase kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups growth factor receptor binding glial cell-derived neurotrophic factor receptor binding identical protein binding protein homodimerization activity protein dimerization activity protein tyrosine kinase binding kinase binding receptor tyrosine kinase binding enzyme binding protein kinase binding	multicellular organismal process system process smooth muscle contraction phasic smooth muscle contraction muscle contraction peristalsis muscle system process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis multicellular organismal process system process smooth muscle contraction phasic smooth muscle contraction muscle contraction peristalsis muscle system process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis developmental process regulation of biological process regulation of cellular process dopaminergic neuron differentiation cellular developmental process regulation of developmental process biological regulation regulation of cell differentiation nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation regulation of dopaminergic neuron differentiation cell differentiation anatomical structure development system development regulation of neuron differentiation mesonephric epithelium development kidney epithelium development branching morphogenesis of an epithelial tube nephron tubule morphogenesis regulation of kidney development regulation of branching involved in ureteric bud morphogenesis positive regulation of developmental process tube morphogenesis animal organ morphogenesis nephron development regulation of morphogenesis of a branching structure epithelium development regulation of animal organ morphogenesis tissue development positive regulation of multicellular organismal process mesonephric tubule development renal tubule morphogenesis nephron morphogenesis nephron epithelium morphogenesis positive regulation of biological process nephron tubule development renal system development ureteric bud morphogenesis positive regulation of morphogenesis of an epithelium branching involved in ureteric bud morphogenesis renal tubule development regulation of morphogenesis of an epithelium regulation of multicellular organismal process epithelial tube morphogenesis regulation of anatomical structure morphogenesis nephron epithelium development ureteric bud development tube development mesonephros development animal organ development morphogenesis of an epithelium tissue morphogenesis anatomical structure morphogenesis kidney morphogenesis morphogenesis of a branching structure positive regulation of branching involved in ureteric bud morphogenesis mesonephric tubule morphogenesis kidney development morphogenesis of a branching epithelium monoamine transport regulation of localization import into cell regulation of catecholamine uptake involved in synaptic transmission cellular localization nitrogen compound transport transport signaling organic hydroxy compound transport catecholamine uptake cell communication dopamine transport localization dopamine uptake involved in synaptic transmission synaptic signaling catecholamine transport establishment of localization in cell regulation of dopamine uptake involved in synaptic transmission neurotransmitter reuptake regulation of neurotransmitter uptake trans-synaptic signaling regulation of transport catecholamine uptake involved in synaptic transmission regulation of neurotransmitter transport cell-cell signaling neurotransmitter transport establishment of localization chemical synaptic transmission amine transport anterograde trans-synaptic signaling neurotransmitter uptake regulation of amine transport synaptic transmission, dopaminergic dopamine uptake sympathetic nervous system development autonomic nervous system development stem cell development neural crest cell differentiation neural crest cell development cell development mesenchyme development mesenchymal cell migration stem cell differentiation ameboidal-type cell migration cell migration mesenchymal cell differentiation cell motility neural crest cell migration neuron apoptotic process negative regulation of neuron apoptotic process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death regulation of neuron apoptotic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA stabilization mRNA catabolic process negative regulation of metabolic process primary metabolic process nucleobase-containing compound catabolic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process negative regulation of RNA metabolic process catabolic process RNA metabolic process macromolecule catabolic process negative regulation of mRNA metabolic process regulation of mRNA catabolic process positive regulation of biosynthetic process positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of catabolic process negative regulation of mRNA catabolic process negative regulation of RNA catabolic process regulation of macromolecule metabolic process regulation of catabolic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process regulation of mRNA stability RNA stabilization negative regulation of biosynthetic process positive regulation of gene expression regulation of RNA stability regulation of mRNA metabolic process parasympathetic nervous system development peripheral nervous system development postganglionic parasympathetic fiber development metanephros development cellular response to stimulus cell surface receptor signaling pathway response to stimulus cell surface receptor protein tyrosine kinase signaling pathway glial cell-derived neurotrophic factor receptor signaling pathway signal transduction enzyme-linked receptor protein signaling pathway enteric nervous system development embryonic epithelial tube formation tube formation epithelial tube formation regulation of epithelial tube formation mesonephric tubule formation embryonic morphogenesis regulation of mesonephros development ureteric bud formation positive regulation of epithelial tube formation embryo development positive regulation of ureteric bud formation nephron tubule formation regulation of ureteric bud formation morphogenesis of embryonic epithelium regulation of multicellular organismal development positive regulation of animal organ morphogenesis anatomical structure formation involved in morphogenesis positive regulation of DNA-templated transcription RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription transcription by RNA polymerase II regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription plasma membrane bounded cell projection organization cell projection organization neuron projection development neuron development head development forebrain development brain development diencephalon development central nervous system development	cellular anatomical structure extracellular region extracellular space
A	GDNF family receptor alpha	molecular transducer activity signaling receptor activity protein serine/threonine kinase activity MAP kinase kinase kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis developmental process multicellular organism development multicellular organismal process anatomical structure development nervous system development system development cellular response to stimulus cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis developmental process multicellular organism development multicellular organismal process anatomical structure development nervous system development system development cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell surface receptor protein tyrosine kinase signaling pathway cell communication signal transduction enzyme-linked receptor protein signaling pathway enteric nervous system development autonomic nervous system development	protein-containing complex receptor complex cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR016649	Glial cell line-derived neurotrophic factor	Family
B	IPR029034	Cystine-knot cytokine	Homologous Superfamily
B	IPR047020	Glial cell line-derived neurotrophic factor, TGF-beta-like domain	Domain
B	IPR043401	Glial cell line-derived neurotrophic factor family	Family
B	IPR001839	Transforming growth factor-beta, C-terminal	Domain
A	IPR037193	GDNF receptor alpha	Homologous Superfamily
A	IPR017372	Glial cell line-derived neurotrophic factor receptor, alpha 1/2	Family
A	IPR003438	Glial cell line-derived neurotrophic factor receptor	Family
A	IPR003503	Glial cell line-derived neurotrophic factor receptor, alpha 1	Family
A	IPR016017	GDNF/GAS1	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.