7DDZ | pdb_00007ddz

The Crystal Structure of Human Neuropeptide Y Y2 Receptor with JNJ-31020028

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Flavoproteins	8044069	3001217	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	7tm_1	e7ddzA2	A: alpha bundles	X: Family A G protein-coupled receptor-like (From Topology)	H: Family A G protein-coupled receptor-like (From Topology)	T: Family A G protein-coupled receptor-like	F: 7tm_1	ECOD (1.6)
A	Flavodoxin_1	e7ddzA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavoproteins/Phosphotyrosine protein phosphatases-like	T: Flavoproteins	F: Flavodoxin_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00001	7 transmembrane receptor (rhodopsin family) (7tm_1)	7 transmembrane receptor (rhodopsin family)	This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ...	This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins [1].	Domain
A	PF00258	Flavodoxin (Flavodoxin_1)	Flavodoxin		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Human Neuropeptide Y Y2 Receptor fusion protein	FMN binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding electron transfer activity molecular transducer activity signaling receptor activity peptide receptor activity FMN binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding electron transfer activity molecular transducer activity signaling receptor activity peptide receptor activity neuropeptide Y receptor activity G protein-coupled receptor activity G protein-coupled peptide receptor activity transmembrane signaling receptor activity neuropeptide receptor activity channel regulator activity ion channel regulator activity calcium channel regulator activity molecular function regulator activity transporter regulator activity peptide YY receptor activity	positive regulation of cytosolic calcium ion concentration biological regulation regulation of biological quality behavior multicellular organismal process locomotory behavior cellular response to stimulus nitric oxide mediated signal transduction regulation of biological process regulation of cellular process response to stimulus signaling intracellular signal transduction cell communication positive regulation of cytosolic calcium ion concentration biological regulation regulation of biological quality behavior multicellular organismal process locomotory behavior cellular response to stimulus nitric oxide mediated signal transduction regulation of biological process regulation of cellular process response to stimulus signaling intracellular signal transduction cell communication intracellular signaling cassette cellular process signal transduction regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of cell adhesion positive regulation of biological process cell-substrate adhesion cell adhesion positive regulation of cell-substrate adhesion positive regulation of cellular process regulation of localization regulation of transport transport secretion negative regulation of biological process negative regulation of transport establishment of localization regulation of secretion localization negative regulation of secretion regulation of circadian sleep/wake cycle regulation of circadian sleep/wake cycle, non-REM sleep regulation of circadian rhythm regulation of behavior circadian sleep/wake cycle, non-REM sleep regulation of multicellular organismal process sleep rhythmic process circadian sleep/wake cycle, sleep circadian sleep/wake cycle rhythmic behavior positive regulation of circadian sleep/wake cycle, non-REM sleep circadian rhythm circadian behavior positive regulation of behavior positive regulation of circadian rhythm positive regulation of multicellular organismal process positive regulation of circadian sleep/wake cycle, sleep regulation of circadian sleep/wake cycle, sleep circadian sleep/wake cycle process positive regulation of peptide secretion nitrogen compound transport regulation of peptide secretion regulation of peptide transport peptide transport peptide secretion positive regulation of secretion positive regulation of transport amide transport monoamine transport regulation of catecholamine secretion organic hydroxy compound transport positive regulation of secretion by cell dopamine transport positive regulation of amine transport secretion by cell regulation of secretion by cell catecholamine transport signal release positive regulation of catecholamine secretion export from cell cell-cell signaling dopamine secretion positive regulation of dopamine secretion catecholamine secretion amine transport regulation of amine transport regulation of dopamine secretion developmental process heart development cardiac chamber morphogenesis heart morphogenesis animal organ development circulatory system development multicellular organism development anatomical structure morphogenesis cardiac ventricle morphogenesis anatomical structure development cardiac chamber development animal organ morphogenesis cardiac left ventricle morphogenesis cardiac ventricle development system development negative regulation of signaling negative regulation of intracellular signal transduction regulation of signal transduction negative regulation of cAMP/PKA signal transduction negative regulation of cell communication cAMP/PKA signal transduction regulation of intracellular signal transduction negative regulation of cellular process regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of cAMP/PKA signal transduction regulation of response to stimulus regulation of cell communication negative regulation of nervous system process system process nervous system process regulation of system process regulation of nervous system process negative regulation of multicellular organismal process synaptic signaling synaptic signaling via neuropeptide modulation of chemical synaptic transmission synaptic transmission, glutamatergic regulation of synaptic transmission, glutamatergic negative regulation of synaptic transmission trans-synaptic signaling chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling negative regulation of synaptic transmission, glutamatergic adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway positive regulation of smooth muscle contraction muscle contraction muscle system process regulation of muscle system process smooth muscle contraction regulation of muscle contraction regulation of smooth muscle contraction positive regulation of muscle contraction regulation of postsynaptic membrane potential chemical synaptic transmission, postsynaptic modulation of excitatory postsynaptic potential cell surface receptor signaling pathway negative regulation of excitatory postsynaptic potential excitatory postsynaptic potential regulation of membrane potential behavioral defense response fear response behavioral fear response defense response response to stress multicellular organismal response to stress negative regulation of feeding behavior negative regulation of behavior feeding behavior regulation of feeding behavior outflow tract morphogenesis	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection cell periphery plasma membrane membrane presynapse synapse cell junction non-motile cilium glutamatergic synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR010087	Flavodoxin, short chain	Family
A	IPR050619	Flavodoxin	Family
A	IPR001226	Flavodoxin, conserved site	Conserved Site
A	IPR001094	Flavodoxin-like	Domain
A	IPR029039	Flavoprotein-like superfamily	Homologous Superfamily
A	IPR008254	Flavodoxin/nitric oxide synthase	Domain
A	IPR000611	Neuropeptide Y receptor family	Family
A	IPR000276	G protein-coupled receptor, rhodopsin-like	Family
A	IPR017452	GPCR, rhodopsin-like, 7TM	Domain
A	IPR001358	Neuropeptide Y2 receptor	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P49146	alcohol abuse cocaine dependence epilepsy substance withdrawal syndrome temporal lobe epilepsy cocaine abuse oligodendroglioma Sjogren syndrome Uncinate Epilepsy astrocytic tumor breast cancer malignant ependymoma pilocytic astrocytoma breast carcinoma glioblastoma alcohol abuse cocaine dependence epilepsy substance withdrawal syndrome temporal lobe epilepsy cocaine abuse oligodendroglioma Sjogren syndrome Uncinate Epilepsy astrocytic tumor breast cancer malignant ependymoma pilocytic astrocytoma breast carcinoma glioblastoma primitive neuroectodermal tumor large cell medulloblastoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	Rhodopsin-like receptors and pumps	G-protein coupled receptors, family A

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	G Protein-Coupled Receptors: Class A	Neuropeptide Y Y₂ receptor with bound selective antagonist JNJ-31020028

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.