7DFO | pdb_00007dfo

Crystal structure of glycoside hydrolase family 11 beta-xylanase from Streptomyces olivaceoviridis E-86 in complex with 4-O-methyl-alpha-D-glucuronopyranosyl xylotetraose

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
I	d7dfoi1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Xylanase/endoglucanase 11/12	automated matches	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
I	d7dfoi2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
H	d7dfoh1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Xylanase/endoglucanase 11/12	automated matches	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
H	d7dfoh2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
G	d7dfog1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Xylanase/endoglucanase 11/12	automated matches	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
G	d7dfog2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
F	d7dfof1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Xylanase/endoglucanase 11/12	automated matches	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
F	d7dfof2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
E	d7dfoe1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Xylanase/endoglucanase 11/12	automated matches	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
E	d7dfoe2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
D	d7dfod1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Xylanase/endoglucanase 11/12	automated matches	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
D	d7dfod2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
C	d7dfoc1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Xylanase/endoglucanase 11/12	automated matches	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
C	d7dfoc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
B	d7dfob1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Xylanase/endoglucanase 11/12	automated matches	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
B	d7dfob2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
A	d7dfoa1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Xylanase/endoglucanase 11/12	automated matches	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)
A	d7dfoa2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptomyces olivaceoviridis ) [TaxId: 1921 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8103280	3000120	SCOP2B (2022-06-29)
H	SCOP2 Family	Xylanase/endoglucanase 11/12	8103279	4002742	SCOP2 (2022-06-29)
H	SCOP2 Superfamily	Concanavalin A-like lectins/glucanases	8103280	3000120	SCOP2 (2022-06-29)
G	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8103280	3000120	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8103280	3000120	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8103280	3000120	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8103280	3000120	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8103280	3000120	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8103280	3000120	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8103280	3000120	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	Glyco_hydro_11	e7dfoI1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Glyco_hydro_11	ECOD (1.6)
H	Glyco_hydro_11	e7dfoH1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Glyco_hydro_11	ECOD (1.6)
G	Glyco_hydro_11	e7dfoG1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Glyco_hydro_11	ECOD (1.6)
F	Glyco_hydro_11	e7dfoF1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Glyco_hydro_11	ECOD (1.6)
E	Glyco_hydro_11	e7dfoE1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Glyco_hydro_11	ECOD (1.6)
D	Glyco_hydro_11	e7dfoD1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Glyco_hydro_11	ECOD (1.6)
C	Glyco_hydro_11	e7dfoC1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Glyco_hydro_11	ECOD (1.6)
B	Glyco_hydro_11	e7dfoB1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Glyco_hydro_11	ECOD (1.6)
A	Glyco_hydro_11	e7dfoA1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Glyco_hydro_11	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I	PF00457	Glycosyl hydrolases family 11 (Glyco_hydro_11)	Glycosyl hydrolases family 11		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I	Endo-1,4-beta-xylanase	xylanase activity hydrolase activity, acting on glycosyl bonds endo-1,4-beta-xylanase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	carbohydrate metabolic process xylan catabolic process catabolic process carbohydrate catabolic process hemicellulose catabolic process primary metabolic process macromolecule catabolic process xylan metabolic process polysaccharide metabolic process polysaccharide catabolic process metabolic process cellular process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR001137	Glycoside hydrolase family 11	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR018208	Glycoside hydrolase family 11, active site 1	Active Site
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR006311	Twin-arginine translocation pathway, signal sequence	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR013319	Glycoside hydrolase family 11/12	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR033123	Glycosyl hydrolase 11 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR033119	Glycoside hydrolase family 11, active site 2	Active Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.