7EC5 | pdb_00007ec5

EV-D68 in complex with 8F12 Fab


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth C]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068016 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth F]V-sete7ec5F1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
B [auth E]V-set_8e7ec5E1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
C [auth A]Rhv_5e7ec5A1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_5ECOD (1.6)
D [auth C]Rhv_3e7ec5C1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_3ECOD (1.6)
E [auth B]Rhv_1e7ec5B1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_1ECOD (1.6)
F [auth D]Pico_P1A_C,Pico_P1A_Ne7ec5D1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Pico_P1A_C,Pico_P1A_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth F]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
B [auth E]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
E [auth B]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
A [auth F]Light ChainIGKV4 Kappagenome polyprotein | capsid protein vp1 | capsid protein vp3SAbDab (2025-11-28)
B [auth E]Heavy ChainIGHV1 -genome polyprotein | capsid protein vp1 | capsid protein vp3SAbDab (2025-11-28)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth A]PF22663Picornavirus coat protein (Rhv_5)Picornavirus coat proteinThis domain is found in capsid proteins from picornavirus, such as enterovirus, rhinovirus and foot-and-mouth disease virus [1-5]. Domain
D [auth C]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
E [auth B]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth F]8F12 Fab light chain---
B [auth E]8F12 Fab heavy chain---
C [auth A]Capsid protein VP1
D [auth C]Capsid protein VP3
E [auth B]Genome polyprotein
F [auth D]Capsid protein VP4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth A]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth A]IPR002527Picornavirus 2B proteinDomain
C [auth A]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth A]IPR003593AAA+ ATPase domainDomain
C [auth A]IPR003138Picornavirus coat protein VP4Family
C [auth A]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth A]IPR001676Picornavirus capsidDomain
C [auth A]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth A]IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth A]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth A]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth A]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth A]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth A]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth A]IPR014838Poliovirus 3A protein-likeDomain
C [auth A]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth A]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth A]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth A]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
D [auth C]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth C]IPR002527Picornavirus 2B proteinDomain
D [auth C]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth C]IPR003593AAA+ ATPase domainDomain
D [auth C]IPR003138Picornavirus coat protein VP4Family
D [auth C]IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth C]IPR001676Picornavirus capsidDomain
D [auth C]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth C]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth C]IPR000081Peptidase C3, picornavirus core protein 2ADomain
D [auth C]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth C]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth C]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth C]IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth C]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth C]IPR014838Poliovirus 3A protein-likeDomain
D [auth C]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
D [auth C]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
D [auth C]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth C]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
E [auth B]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
E [auth B]IPR002527Picornavirus 2B proteinDomain
E [auth B]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
E [auth B]IPR003593AAA+ ATPase domainDomain
E [auth B]IPR003138Picornavirus coat protein VP4Family
E [auth B]IPR000199Peptidase C3A/C3B, picornaviralDomain
E [auth B]IPR001676Picornavirus capsidDomain
E [auth B]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
E [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth B]IPR000081Peptidase C3, picornavirus core protein 2ADomain
E [auth B]IPR029053Viral coat protein subunitHomologous Superfamily
E [auth B]IPR009003Peptidase S1, PA clanHomologous Superfamily
E [auth B]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
E [auth B]IPR044067Picornavirales 3C/3C-like protease domainDomain
E [auth B]IPR033703Picornavirus/Calicivirus coat proteinDomain
E [auth B]IPR014838Poliovirus 3A protein-likeDomain
E [auth B]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
E [auth B]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
E [auth B]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
E [auth B]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
F [auth D]IPR029053Viral coat protein subunitHomologous Superfamily
F [auth D]IPR003138Picornavirus coat protein VP4Family
F [auth D]IPR001676Picornavirus capsidDomain
F [auth D]IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily