Crystal structure of Pseudomonas sp. PDC86 substrate-binding protein Aapf in complex with a signaling molecule HEHEAA
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d7kz9b_ | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | automated matches | automated matches | (Pseudomonas sp. PDC86 ) [TaxId: 1882759 ], | SCOPe (2.08) |
| A | d7kz9a_ | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | automated matches | automated matches | (Pseudomonas sp. PDC86 ) [TaxId: 1882759 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | SBP_bac_5_1st | e7kz9B3 | A: a+b two layers | X: Alpha-beta plaits | H: Oligo-peptide binding protein (OPPA) insertion domain (From Topology) | T: Oligo-peptide binding protein (OPPA) insertion domain | F: SBP_bac_5_1st | ECOD (1.6) |
| B | SBP_bac_5_3rd | e7kz9B2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_5_3rd | ECOD (1.6) |
| B | SBP_bac_5_2nd | e7kz9B1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_5_2nd | ECOD (1.6) |
| A | SBP_bac_5_1st | e7kz9A3 | A: a+b two layers | X: Alpha-beta plaits | H: Oligo-peptide binding protein (OPPA) insertion domain (From Topology) | T: Oligo-peptide binding protein (OPPA) insertion domain | F: SBP_bac_5_1st | ECOD (1.6) |
| A | SBP_bac_5_3rd | e7kz9A1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_5_3rd | ECOD (1.6) |
| A | SBP_bac_5_2nd | e7kz9A2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_5_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.90.76.10 | Alpha Beta | Alpha-Beta Complex | Dipeptide-binding Protein | domain 1 | CATH (utative) |
| B | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (utative) |
| B | 3.10.105.10 | Alpha Beta | Roll | Dipeptide-binding Protein | domain 3 | CATH (utative) |
| A | 3.90.76.10 | Alpha Beta | Alpha-Beta Complex | Dipeptide-binding Protein | domain 1 | CATH (utative) |
| A | 3.10.105.10 | Alpha Beta | Roll | Dipeptide-binding Protein | domain 3 | CATH (utative) |
