7MUQ | pdb_00007muq

Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DE [auth BK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
DG [auth FK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
GC [auth AK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
I [auth GK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
IF [auth DK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
JA [auth IK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
LB [auth KK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
NC [auth MK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
RF [auth EK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
V [auth HK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
WA [auth JK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
WE [auth CK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
XB [auth LK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
GE [auth BL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
J [auth GL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
JF [auth DL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
KA [auth IL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
KD [auth AL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
MB [auth KL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
OC [auth ML]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
OG [auth FL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
SF [auth EL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
W [auth HL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
XA [auth JL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
XE [auth CL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
YB [auth LL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth AG]TrbIe7muqAG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
BA [auth BG]TrbIe7muqBG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
CB [auth CG]TrbIe7muqCG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
DC [auth DG]TrbIe7muqDG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
ED [auth EG]TrbIe7muqEG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
EG [auth HG]TrbIe7muqHG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
FE [auth FG]TrbIe7muqFG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
FG [auth IG]TrbIe7muqIG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
GF [auth GG]TrbIe7muqGG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
GG [auth JG]TrbIe7muqJG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
HG [auth KG]TrbIe7muqKG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
IG [auth LG]TrbIe7muqLG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
JG [auth MG]TrbIe7muqMG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
KG [auth NG]TrbIe7muqNG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
LG [auth OG]TrbIe7muqOG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
MG [auth PG]TrbIe7muqPG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
DE [auth BK]OmpAe7muqBK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
DG [auth FK]OmpAe7muqFK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
GC [auth AK]OmpAe7muqAK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
I [auth GK]OmpAe7muqGK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
IF [auth DK]OmpAe7muqDK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
JA [auth IK]OmpAe7muqIK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
LB [auth KK]OmpAe7muqKK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
NC [auth MK]OmpAe7muqMK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
RF [auth EK]OmpAe7muqEK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
V [auth HK]OmpAe7muqHK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
WA [auth JK]OmpAe7muqJK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
WE [auth CK]OmpAe7muqCK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
XB [auth LK]OmpAe7muqLK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
GE [auth BL]OmpAe7muqBL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
J [auth GL]OmpAe7muqGL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
JF [auth DL]OmpAe7muqDL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
KA [auth IL]OmpAe7muqIL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
KD [auth AL]OmpAe7muqAL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
MB [auth KL]OmpAe7muqKL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
OC [auth ML]OmpAe7muqML1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
OG [auth FL]OmpAe7muqFL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
SF [auth EL]OmpAe7muqEL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
W [auth HL]OmpAe7muqHL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
XA [auth JL]OmpAe7muqJL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
XE [auth CL]OmpAe7muqCL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
YB [auth LL]OmpAe7muqLL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03743Bacterial conjugation TrbI-like protein (TrbI)Bacterial conjugation TrbI-like protein- Family
PF16932Type IV secretory system, conjugal DNA-protein transfer (T4SS_TraI)Type IV secretory system, conjugal DNA-protein transfer- Family
PF16816DotD protein (DotD)DotD proteinThe DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH [1]. Domain
PF00691OmpA family (OmpA)OmpA family- Family
PF00691OmpA family (OmpA)OmpA family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
IcmE protein- -
DotC- - -
DotF- -
DotD- - -
Type IV secretion protein IcmK---
Inner membrane lipoprotein YiaD- -
Outer membrane protein, OmpA family protein- -
DUF2807 domain-containing protein---
Neurogenic locus notch---
Unknown protein fragment---
Unknown protein fragment---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR053285Thylakoid lumenal pentapeptide repeat proteinFamily
IPR042217Type IV secretion system, VirB10/TrbIHomologous Superfamily
IPR049855DotG/IcmE-like, C-terminal domainDomain
IPR005498Type IV secretion system, VirB10/TraB/TrbIFamily
IPR031618Putative type IV secretory system proteinFamily
IPR038140DotD superfamilyHomologous Superfamily
IPR031817DotD proteinFamily
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily