7MUS | pdb_00007mus

Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AE [auth BK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
CG [auth FK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
EC [auth AK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
F [auth GK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
GA [auth IK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
HB [auth KK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
HF [auth DK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
KC [auth MK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
QF [auth EK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
S [auth HK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
SA [auth JK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
UB [auth LK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
VE [auth CK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
BE [auth BL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
DG [auth FL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
G [auth GL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
HA [auth IL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
IB [auth KL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
ID [auth AL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
IF [auth DL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
MC [auth ML]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
RF [auth EL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
T [auth HL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
TA [auth JL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
VB [auth LL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
WE [auth CL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth AG]TrbIe7musAG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
BA [auth BG]TrbIe7musBG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
CB [auth CG]TrbIe7musCG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
DC [auth DG]TrbIe7musDG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
ED [auth EG]TrbIe7musEG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
EG [auth HG]TrbIe7musHG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
FE [auth FG]TrbIe7musFG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
FG [auth IG]TrbIe7musIG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
GF [auth GG]TrbIe7musGG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
GG [auth JG]TrbIe7musJG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
HG [auth KG]TrbIe7musKG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
IG [auth LG]TrbIe7musLG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
JG [auth MG]TrbIe7musMG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
KG [auth NG]TrbIe7musNG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
LG [auth OG]TrbIe7musOG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
MG [auth PG]TrbIe7musPG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
AE [auth BK]OmpAe7musBK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
CG [auth FK]OmpAe7musFK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
EC [auth AK]OmpAe7musAK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
F [auth GK]OmpAe7musGK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
GA [auth IK]OmpAe7musIK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
HB [auth KK]OmpAe7musKK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
HF [auth DK]OmpAe7musDK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
KC [auth MK]OmpAe7musMK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
QF [auth EK]OmpAe7musEK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
S [auth HK]OmpAe7musHK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
SA [auth JK]OmpAe7musJK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
UB [auth LK]OmpAe7musLK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
VE [auth CK]OmpAe7musCK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
BE [auth BL]OmpAe7musBL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
DG [auth FL]OmpAe7musFL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
G [auth GL]OmpAe7musGL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
HA [auth IL]OmpAe7musIL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
IB [auth KL]OmpAe7musKL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
ID [auth AL]OmpAe7musAL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
IF [auth DL]OmpAe7musDL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
MC [auth ML]OmpAe7musML1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
RF [auth EL]OmpAe7musEL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
T [auth HL]OmpAe7musHL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
TA [auth JL]OmpAe7musJL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
VB [auth LL]OmpAe7musLL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
WE [auth CL]OmpAe7musCL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03743Bacterial conjugation TrbI-like protein (TrbI)Bacterial conjugation TrbI-like protein- Family
PF16932Type IV secretory system, conjugal DNA-protein transfer (T4SS_TraI)Type IV secretory system, conjugal DNA-protein transfer- Family
PF16816DotD protein (DotD)DotD proteinThe DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH [1]. Domain
PF00691OmpA family (OmpA)OmpA family- Family
PF00691OmpA family (OmpA)OmpA family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
IcmE protein- -
Unknown protein fragment---
DotC- - -
DotD- - -
DotF- -
Type IV secretion protein IcmK---
Inner membrane lipoprotein YiaD- -
Outer membrane protein, OmpA family protein- -
DUF2807 domain-containing protein---
Neurogenic locus notch---
Unknown protein fragment---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR053285Thylakoid lumenal pentapeptide repeat proteinFamily
IPR042217Type IV secretion system, VirB10/TrbIHomologous Superfamily
IPR049855DotG/IcmE-like, C-terminal domainDomain
IPR005498Type IV secretion system, VirB10/TraB/TrbIFamily
IPR031618Putative type IV secretory system proteinFamily
IPR038140DotD superfamilyHomologous Superfamily
IPR031817DotD proteinFamily
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily