7OIQ | pdb_00007oiq

Crystal structure of AP2 Mu2 in complex with FCHO2 WxxPhi motif (C2 crystal form)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth AAA]	SCOP2B Superfamily	mu adaptin domain-like	8036010	3000810	SCOP2B (2022-06-29)
B [auth BBB]	SCOP2B Superfamily	mu adaptin domain-like	8036010	3000810	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth AAA]	Adap_comp_sub_2nd	e7oiqAAA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: Adap_comp_sub_2nd	ECOD (1.6)
A [auth AAA]	Adap_comp_sub_1st	e7oiqAAA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: Adap_comp_sub_1st	ECOD (1.6)
B [auth BBB]	Adap_comp_sub_2nd	e7oiqBBB2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: Adap_comp_sub_2nd	ECOD (1.6)
B [auth BBB]	Adap_comp_sub_1st	e7oiqBBB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: Adap_comp_sub_1st	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AAA], B [auth BBB]	PF00928	Adaptor complexes medium subunit family (Adap_comp_sub)	Adaptor complexes medium subunit family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth CCC], D [auth DDD]	F-BAR domain only protein 2	binding phospholipid binding lipid binding phosphatidylinositol binding ion binding phosphatidylinositol-4,5-bisphosphate binding anion binding phosphatidylinositol bisphosphate binding phosphatidylinositol phosphate binding small molecule binding identical protein binding protein binding modified amino acid binding phosphatidylserine binding	membrane organization cellular component organization membrane invagination cellular process cellular component organization or biogenesis synaptic vesicle endocytosis import into cell cellular localization transport synaptic vesicle cycle establishment of localization vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse membrane organization cellular component organization membrane invagination cellular process cellular component organization or biogenesis synaptic vesicle endocytosis import into cell cellular localization transport synaptic vesicle cycle establishment of localization vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse synaptic vesicle recycling localization establishment of localization in cell endocytosis clathrin coat assembly cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly protein localization to cell periphery protein localization to plasma membrane macromolecule localization intracellular protein localization localization within membrane protein localization to membrane clathrin-dependent endocytosis receptor-mediated endocytosis	cellular anatomical structure clathrin-coated pit membrane endomembrane system membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle clathrin-coated vesicle coated vesicle cytoplasm cellular anatomical structure clathrin-coated pit membrane endomembrane system membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle clathrin-coated vesicle coated vesicle cytoplasm vesicle cytosol cell periphery plasma membrane presynapse synapse cell junction
A [auth AAA], B [auth BBB]	AP-2 complex subunit mu	signal sequence binding binding peptide binding protein binding transmembrane transporter binding lipid binding cargo adaptor activity clathrin adaptor activity protein-macromolecule adaptor activity molecular adaptor activity low-density lipoprotein particle receptor binding signaling receptor binding lipoprotein particle receptor binding disordered domain specific binding signal sequence binding binding peptide binding protein binding transmembrane transporter binding lipid binding cargo adaptor activity clathrin adaptor activity protein-macromolecule adaptor activity molecular adaptor activity low-density lipoprotein particle receptor binding signaling receptor binding lipoprotein particle receptor binding disordered domain specific binding protein domain specific binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis synaptic vesicle endocytosis import into cell cellular localization transport synaptic vesicle cycle establishment of localization vesicle-mediated transport cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis synaptic vesicle endocytosis import into cell cellular localization transport synaptic vesicle cycle establishment of localization vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse synaptic vesicle recycling localization establishment of localization in cell endocytosis regulation of localization regulation of cellular process regulation of protein localization negative regulation of biological process negative regulation of protein localization to plasma membrane negative regulation of cellular process intracellular protein localization regulation of protein localization to membrane negative regulation of protein localization regulation of biological process protein localization to cell periphery protein localization to plasma membrane biological regulation regulation of protein localization to cell periphery localization within membrane protein localization to membrane negative regulation of protein localization to membrane regulation of cellular localization macromolecule localization negative regulation of protein localization to cell periphery regulation of protein localization to plasma membrane receptor internalization receptor-mediated endocytosis regulation of cellular component organization positive regulation of cellular component organization positive regulation of biological process regulation of receptor internalization positive regulation of endocytosis positive regulation of receptor-mediated endocytosis positive regulation of cellular process regulation of endocytosis regulation of transport regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport positive regulation of receptor internalization positive regulation of transport clathrin-dependent endocytosis postsynaptic neurotransmitter receptor internalization neurotransmitter receptor internalization regulation of postsynaptic membrane neurotransmitter receptor levels postsynaptic endocytosis regulation of biological quality regulation of cellular component size regulation of vesicle size regulation of anatomical structure size membrane organization vesicle budding from membrane vesicle organization organelle organization establishment of protein localization nitrogen compound transport intracellular transport protein transport intracellular protein transport positive regulation of synaptic vesicle recycling regulation of synaptic vesicle recycling regulation of synaptic vesicle endocytosis positive regulation of synaptic vesicle endocytosis	cellular anatomical structure clathrin-coated pit membrane endomembrane system axon synapse neuron projection axon terminus plasma membrane bounded cell projection presynapse cell projection distal axon terminal bouton cell junction cellular anatomical structure clathrin-coated pit membrane endomembrane system axon synapse neuron projection axon terminus plasma membrane bounded cell projection presynapse cell projection distal axon terminal bouton cell junction neuron projection terminus cell periphery plasma membrane membrane-bounded organelle protein-containing complex intracellular anatomical structure vesicle coat intracellular vesicle membrane protein complex intracellular organelle membrane coat bounding membrane of organelle AP-type membrane coat adaptor complex AP-2 adaptor complex cytoplasmic vesicle vesicle membrane clathrin-coated vesicle endocytic vesicle membrane coated vesicle clathrin vesicle coat vesicle endocytic vesicle clathrin-coated vesicle membrane clathrin coat of coated pit clathrin coat of endocytic vesicle clathrin-coated endocytic vesicle membrane plasma membrane protein complex intracellular membrane-bounded organelle coated membrane clathrin-coated endocytic vesicle clathrin coat cytoplasmic vesicle membrane coated vesicle membrane organelle cytoplasm organelle membrane clathrin adaptor complex glutamatergic synapse extrinsic component of plasma membrane presynaptic endocytic zone presynaptic membrane extrinsic component of presynaptic endocytic zone membrane synaptic membrane extrinsic component of synaptic membrane presynaptic endocytic zone membrane extrinsic component of presynaptic membrane plasma membrane region extrinsic component of membrane postsynapse transport vesicle synaptic vesicle secretory vesicle exocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth CCC], D [auth DDD]	IPR054713	GMIP/FCHO2-like, FCH domain	Domain
C [auth CCC], D [auth DDD]	IPR018808	Muniscin, C-terminal	Domain
C [auth CCC], D [auth DDD]	IPR030122	F-BAR domain only protein 2, F-BAR domain	Domain
C [auth CCC], D [auth DDD]	IPR028565	Mu homology domain	Domain
C [auth CCC], D [auth DDD]	IPR027267	AH/BAR domain superfamily	Homologous Superfamily
C [auth CCC], D [auth DDD]	IPR001060	FCH domain	Domain
C [auth CCC], D [auth DDD]	IPR031160	F-BAR domain	Domain
A [auth AAA], B [auth BBB]	IPR043512	Mu2, C-terminal domain	Domain
A [auth AAA], B [auth BBB]	IPR050431	Adaptor complexes medium subunit	Family
A [auth AAA], B [auth BBB]	IPR036168	AP-2 complex subunit mu, C-terminal superfamily	Homologous Superfamily
A [auth AAA], B [auth BBB]	IPR028565	Mu homology domain	Domain
A [auth AAA], B [auth BBB]	IPR018240	Clathrin adaptor, mu subunit, conserved site	Conserved Site
A [auth AAA], B [auth BBB]	IPR001392	Clathrin adaptor, mu subunit	Family
A [auth AAA], B [auth BBB]	IPR011012	Longin-like domain superfamily	Homologous Superfamily
A [auth AAA], B [auth BBB]	IPR043532	AP-2 complex subunit mu, N-terminal	Domain
A [auth AAA], B [auth BBB]	IPR022775	AP complex, mu/sigma subunit	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth CCC], D [auth DDD]	Pharos: Q0JRZ9	acne large cell medulloblastoma MALT lymphoma ovarian cancer diabetes mellitus lung carcinoma myopathy pancreatic ductal adenocarcinoma Familial Ménière disease malignant pancreatic neoplasm non-small cell lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.