7TBJ | pdb_00007tbj

Composite structure of the human nuclear pore complex (NPC) symmetric core generated with a 12A cryo-ET map of the purified HeLa cell NPC

External Resource: Annotation

Domain Annotation: ECOD Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth D7]	Nic96	e7tbjD71	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nic96	ECOD (1.6)
X [auth D6]	Nic96	e7tbjD61	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nic96	ECOD (1.6)
W [auth D5]	Nic96	e7tbjD51	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nic96	ECOD (1.6)
V [auth D4]	Nic96	e7tbjD41	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nic96	ECOD (1.6)
U [auth D3]	Nic96	e7tbjD31	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nic96	ECOD (1.6)
T [auth D2]	Nic96	e7tbjD21	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nic96	ECOD (1.6)
S [auth D1]	Nic96	e7tbjD11	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nic96	ECOD (1.6)
RD [auth b4]	ANAPC4_WD40_2	e7tbjb41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_2	ECOD (1.6)
QD [auth b3]	ANAPC4_WD40_2	e7tbjb31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_2	ECOD (1.6)
PD [auth b2]	ANAPC4_WD40_2	e7tbjb21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_2	ECOD (1.6)
OD [auth b1]	ANAPC4_WD40_2	e7tbjb11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_2	ECOD (1.6)
F [auth A6]	Nucleoporin_N	e7tbjA62	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nucleoporin_N	ECOD (1.6)
E [auth A5]	Nucleoporin_N	e7tbjA52	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nucleoporin_N	ECOD (1.6)
ND [auth a4]	ANAPC4_WD40_2	e7tbja41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_2	ECOD (1.6)
MD [auth a3]	ANAPC4_WD40_2	e7tbja31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_2	ECOD (1.6)
LD [auth a2]	ANAPC4_WD40_2	e7tbja21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_2	ECOD (1.6)
KD [auth a1]	ANAPC4_WD40_2	e7tbja11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_2	ECOD (1.6)
JD [auth Z4]	Nup160	e7tbjZ43	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nup160	ECOD (1.6)
JD [auth Z4]	EUF08019	e7tbjZ42	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: EUF08019	ECOD (1.6)
JD [auth Z4]	KOG4521_2nd	e7tbjZ41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: KOG4521_2nd	ECOD (1.6)
ID [auth Z3]	Nup160	e7tbjZ31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nup160	ECOD (1.6)
ID [auth Z3]	EUF08019	e7tbjZ33	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: EUF08019	ECOD (1.6)
ID [auth Z3]	KOG4521_2nd	e7tbjZ32	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: KOG4521_2nd	ECOD (1.6)
HD [auth Z2]	Nup160	e7tbjZ22	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nup160	ECOD (1.6)
HD [auth Z2]	EUF08019	e7tbjZ21	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: EUF08019	ECOD (1.6)
HD [auth Z2]	KOG4521_2nd	e7tbjZ23	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: KOG4521_2nd	ECOD (1.6)
GD [auth Z1]	Nup160	e7tbjZ13	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nup160	ECOD (1.6)
GD [auth Z1]	EUF08019	e7tbjZ12	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: EUF08019	ECOD (1.6)
GD [auth Z1]	KOG4521_2nd	e7tbjZ11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: KOG4521_2nd	ECOD (1.6)
FD [auth Y4]	ANAPC4_WD40_6	e7tbjY41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_6	ECOD (1.6)
ED [auth Y3]	ANAPC4_WD40_6	e7tbjY31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_6	ECOD (1.6)
DD [auth Y2]	ANAPC4_WD40_6	e7tbjY21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_6	ECOD (1.6)
CD [auth Y1]	ANAPC4_WD40_6	e7tbjY11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_6	ECOD (1.6)
ZC [auth X2]	Nucleopor_Nup85	e7tbjX21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: Nucleopor_Nup85	ECOD (1.6)
YC [auth X1]	Nucleopor_Nup85	e7tbjX11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: Nucleopor_Nup85	ECOD (1.6)
BD [auth X4]	Nucleopor_Nup85	e7tbjX41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: Nucleopor_Nup85	ECOD (1.6)
AD [auth X3]	Nucleopor_Nup85	e7tbjX31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: Nucleopor_Nup85	ECOD (1.6)
XC [auth W4]	ANAPC4_WD40_19	e7tbjW41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_19	ECOD (1.6)
WC [auth W3]	ANAPC4_WD40_19	e7tbjW31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_19	ECOD (1.6)
VC [auth W2]	ANAPC4_WD40_19	e7tbjW21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_19	ECOD (1.6)
UC [auth W1]	ANAPC4_WD40_19	e7tbjW11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_19	ECOD (1.6)
TC [auth V4]	Nup96	e7tbjV41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: Nup96	ECOD (1.6)
SC [auth V3]	Nup96	e7tbjV31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: Nup96	ECOD (1.6)
RC [auth V2]	Nup96	e7tbjV21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: Nup96	ECOD (1.6)
QC [auth V1]	Nup96	e7tbjV11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: Nup96	ECOD (1.6)
PC [auth U4]	Nup84_Nup100	e7tbjU41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: Nup84_Nup100	ECOD (1.6)
OC [auth U3]	Nup84_Nup100	e7tbjU31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: Nup84_Nup100	ECOD (1.6)
NC [auth U2]	Nup84_Nup100	e7tbjU21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: Nup84_Nup100	ECOD (1.6)
MC [auth U1]	Nup84_Nup100	e7tbjU11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: Nup84_Nup100	ECOD (1.6)
LC [auth T4]	Nup84_Nup100	e7tbjT41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: Nup84_Nup100	ECOD (1.6)
KC [auth T3]	Nup84_Nup100	e7tbjT31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: Nup84_Nup100	ECOD (1.6)
JC [auth T2]	Nup84_Nup100	e7tbjT21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: Nup84_Nup100	ECOD (1.6)
IC [auth T1]	Nup84_Nup100	e7tbjT11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: Nup84_Nup100	ECOD (1.6)
HC [auth S4]	Nucleoporin_N	e7tbjS42	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nucleoporin_N	ECOD (1.6)
HC [auth S4]	Nucleoporin_C_C	e7tbjS41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: Nucleoporin_C_C	ECOD (1.6)
GC [auth S3]	Nucleoporin_N	e7tbjS32	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nucleoporin_N	ECOD (1.6)
GC [auth S3]	Nucleoporin_C_C	e7tbjS31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: Nucleoporin_C_C	ECOD (1.6)
FC [auth S2]	Nucleoporin_N	e7tbjS22	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nucleoporin_N	ECOD (1.6)
FC [auth S2]	Nucleoporin_C_C	e7tbjS21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: Nucleoporin_C_C	ECOD (1.6)
EC [auth S1]	Nucleoporin_N	e7tbjS12	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nucleoporin_N	ECOD (1.6)
EC [auth S1]	Nucleoporin_C_C	e7tbjS11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: Nucleoporin_C_C	ECOD (1.6)
D [auth A4]	Nucleoporin_N	e7tbjA42	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nucleoporin_N	ECOD (1.6)
B [auth A2]	Nucleoporin_N	e7tbjA22	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nucleoporin_N	ECOD (1.6)
ZB [auth Q4]	Nup35_RRM	e7tbjQ41	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: Nup35_RRM	ECOD (1.6)
YB [auth Q3]	Nup35_RRM	e7tbjQ31	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: Nup35_RRM	ECOD (1.6)
XB [auth Q2]	Nup35_RRM	e7tbjQ21	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: Nup35_RRM	ECOD (1.6)
WB [auth Q1]	Nup35_RRM	e7tbjQ11	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: Nup35_RRM	ECOD (1.6)
VB [auth P4]	KOG3091_1st	e7tbjP41	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: KOG3091_1st	ECOD (1.6)
UB [auth P3]	KOG3091_1st	e7tbjP31	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: KOG3091_1st	ECOD (1.6)
TB [auth P2]	KOG3091_1st	e7tbjP21	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: KOG3091_1st	ECOD (1.6)
SB [auth P1]	KOG3091_1st	e7tbjP11	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: KOG3091_1st	ECOD (1.6)
QA [auth I5]	Nup192_1st	e7tbjI52	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nup192_1st	ECOD (1.6)
PA [auth I4]	Nup192_1st	e7tbjI42	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nup192_1st	ECOD (1.6)
OA [auth I3]	Nup192_1st	e7tbjI32	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nup192_1st	ECOD (1.6)
NA [auth I2]	Nup192_1st	e7tbjI22	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nup192_1st	ECOD (1.6)
MA [auth I1]	Nup192_1st	e7tbjI12	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nup192_1st	ECOD (1.6)
C [auth A3]	Nucleoporin_N	e7tbjA32	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nucleoporin_N	ECOD (1.6)
A [auth A1]	Nucleoporin_N	e7tbjA12	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nucleoporin_N	ECOD (1.6)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 7TBJ | pdb_00007tbj

Composite structure of the human nuclear pore complex (NPC) symmetric core generated with a 12A cryo-ET map of the purified HeLa cell NPC

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

7TBJ | pdb_00007tbj