7Y64 | pdb_00007y64

Cryo-EM structure of C5a-bound C5aR1 in complex with Gi protein


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth E]SCOP2B SuperfamilyAnaphylotoxins (complement system) 8037606 3000387 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyG protein-coupled receptor-like 8091170 3000473 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTransducin (heterotrimeric G protein), gamma chain 8070798 3001771 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRas-like P-loop GTPases 8056779 3002022 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth E]ANATOe7y64E1 A: few secondary structure elementsX: Anaphylotoxins (complement system) (From Topology)H: Anaphylotoxins (complement system) (From Topology)T: Anaphylotoxins (complement system)F: ANATOECOD (1.6)
E [auth D]7tm_1_1e7y64D1 A: alpha bundlesX: Family A G protein-coupled receptor-like (From Topology)H: Family A G protein-coupled receptor-like (From Topology)T: Family A G protein-coupled receptor-likeF: 7tm_1_1ECOD (1.6)
D [auth S]V-sete7y64S1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
D [auth S]V-set_12e7y64S2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)
CG-gammae7y64C1 A: extended segmentsX: Transducin (heterotrimeric G protein), gamma chain (From Topology)H: Transducin (heterotrimeric G protein), gamma chain (From Topology)T: Transducin (heterotrimeric G protein), gamma chainF: G-gammaECOD (1.6)
BANAPC4_WD40_3e7y64B1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_3ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
E [auth D]1.20.1070.10 Mainly Alpha Up-down Bundle Rhopdopsin 7-helix transmembrane proteins Rhodopsin 7-helix transmembrane proteinsCATH (utative)
D [auth S]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
B2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth E]PF01821Anaphylotoxin-like domain (ANATO)Anaphylotoxin-like domainC3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins. ...C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins.
Domain
E [auth D]PF000017 transmembrane receptor (rhodopsin family) (7tm_1)7 transmembrane receptor (rhodopsin family)This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ...This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins [1].
Domain
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF00503G-protein alpha subunit (G-alpha)G-protein alpha subunitG proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ...G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth E]C5a anaphylatoxin
E [auth D]C5a anaphylatoxin chemotactic receptor 1
D [auth S]scFV16---
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Guanine nucleotide-binding protein G(i) subunit alpha-1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth E]IPR009048Alpha-macroglobulin, receptor-bindingDomain
F [auth E]IPR041555Macroglobulin domain MG3Domain
F [auth E]IPR001599Alpha-2-macroglobulinDomain
F [auth E]IPR048843Complement component 5, CUB domainDomain
F [auth E]IPR018081Anaphylatoxin, complement systemHomologous Superfamily
F [auth E]IPR018933Netrin module, non-TIMP typeDomain
F [auth E]IPR001840Anaphylatoxin, complement system domainDomain
F [auth E]IPR041425Complement C3/4/5, macroglobulin domain MG1Domain
F [auth E]IPR011625Alpha-2-macroglobulin, bait region domainDomain
F [auth E]IPR001134Netrin domainDomain
F [auth E]IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldHomologous Superfamily
F [auth E]IPR011626Alpha-macroglobulin-like, TED domainDomain
F [auth E]IPR000020Anaphylatoxin/fibulinDomain
F [auth E]IPR036595Alpha-macroglobulin, receptor-binding domain superfamilyHomologous Superfamily
F [auth E]IPR002890Macroglobulin domainDomain
F [auth E]IPR013783Immunoglobulin-like foldHomologous Superfamily
F [auth E]IPR050473Alpha-2-macroglobulin/Complement systemFamily
F [auth E]IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidHomologous Superfamily
F [auth E]IPR040839Macroglobulin domain MG4Domain
E [auth D]IPR002234Anaphylatoxin chemotactic receptor, C3a/C5a1/C5a2Family
E [auth D]IPR000276G protein-coupled receptor, rhodopsin-likeFamily
E [auth D]IPR017452GPCR, rhodopsin-like, 7TMDomain
E [auth D]IPR000826Formyl peptide receptor-relatedFamily
IPR001770G-protein, gamma subunitFamily
IPR015898G-protein, gamma subunit-like domainDomain
IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily
IPR019775WD40 repeat, conserved siteConserved Site
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IPR001632G-protein beta subunit-like, WD40 repeatsDomain
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR016346G-protein subunit beta 1-5Family
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR001019Guanine nucleotide binding protein (G-protein), alpha subunitFamily
IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001408G-protein alpha subunit, group IFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
F [auth E]PharosP01031
E [auth D]PharosP21730
PharosP59768
PharosP62873
PharosP63096