7YFL | pdb_00007yfl

Structure of GluN1a-GluN2D NMDA receptor in complex with agonists glycine and glutamate.

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DF_UNCLASSIFIEDe7yflD4 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe7yflD2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe7yflD5 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe7yflB2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe7yflB4 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe7yflB1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe7yflC4 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe7yflC1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe7yflC2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe7yflA1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe7yflA3 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe7yflA5 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
B, D
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
A, C
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A, C
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D
Glutamate receptor ionotropic, NMDA 2D
A, C
Glutamate receptor ionotropic, NMDA 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, D
IPR001320Ionotropic glutamate receptor, C-terminalDomain
B, D
IPR028082Periplasmic binding protein-like IHomologous Superfamily
B, D
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
B, D
IPR015683Ionotropic glutamate receptorFamily
B, D
IPR001508Ionotropic glutamate receptor, metazoaFamily
B, D
IPR001828Receptor, ligand binding regionDomain
A, C
IPR028082Periplasmic binding protein-like IHomologous Superfamily
A, C
IPR001508Ionotropic glutamate receptor, metazoaFamily
A, C
IPR001828Receptor, ligand binding regionDomain
A, C
IPR001320Ionotropic glutamate receptor, C-terminalDomain
A, C
IPR049873Glutamate [NMDA] receptor subunit 1-like, N-terminal LIVBP-like domainDomain
A, C
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A, C
IPR015683Ionotropic glutamate receptorFamily
A, C
IPR049872Glutamate [NMDA] receptor subunit 1-like, ligand-binding domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B, D
Pharos:  O15399
A, C
Pharos:  Q05586

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D
OPMTransmembraneAlpha-helical polytopicIon channel (VIC) superfamilyGlutamate-gated Ion Channel (GIC) family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
A, B, C, D
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALChannels: Other Ion ChannelsGluN1a/GluN2D NMDA receptor with bound glycine and glutamate