7YSH | pdb_00007ysh

Cryo-EM Structure of FGF23-FGFR1c-aKlotho-HS Quaternary Complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyCytokine 8062789 3000648 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8055565 3000071 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054783 3000071 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8055565 3000071 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054783 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF_UNCLASSIFIEDe7yshA1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe7yshB1 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: F_UNCLASSIFIEDECOD (1.6)
C [auth D]F_UNCLASSIFIEDe7yshD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: F_UNCLASSIFIEDECOD (1.6)
D [auth E]F_UNCLASSIFIEDe7yshE2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: F_UNCLASSIFIEDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00232Glycosyl hydrolase family 1 (Glyco_hydro_1)Glycosyl hydrolase family 1Domain
PF00167Fibroblast growth factor (FGF)Fibroblast growth factorFibroblast growth factors are a family of proteins involved in growth and differentiation in a wide range of contexts. They are found in a wide range of organisms, from nematodes to humans [2]. Most share an internal core region of high similarity, c ...Fibroblast growth factors are a family of proteins involved in growth and differentiation in a wide range of contexts. They are found in a wide range of organisms, from nematodes to humans [2]. Most share an internal core region of high similarity, conserved residues in which are involved in binding with their receptors. On binding, they cause dimerisation of their tyrosine kinase receptors leading to intracellular signalling. There are currently four known tyrosine kinase receptors for fibroblast growth factors. These receptors can each bind several different members of this family. Members of this family have a beta trefoil structure. Most have N-terminal signal peptides and are secreted. A few lack signal sequences but are secreted anyway; still others also lack the signal peptide but are found on the cell surface and within the extracellular matrix. A third group remain intracellular [2]. They have central roles in development, regulating cell proliferation, migration and differentiation. On the other hand, they are important in tissue repair following injury in adult organisms [2].
Domain
C [auth D],
D [auth E]
PF07679Immunoglobulin I-set domain (I-set)Immunoglobulin I-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Klotho
Fibroblast growth factor 23
C [auth D],
D [auth E]
Isoform 20 of Fibroblast growth factor receptor 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001360Glycoside hydrolase family 1Family
IPR033132Glycosyl hydrolases family 1, N-terminal conserved siteConserved Site
IPR017853Glycoside hydrolase superfamilyHomologous Superfamily
IPR008996Cytokine IL1/FGFHomologous Superfamily
IPR002209Fibroblast growth factor familyFamily
C [auth D],
D [auth E]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
C [auth D],
D [auth E]
IPR020635Tyrosine-protein kinase, catalytic domainDomain
C [auth D],
D [auth E]
IPR000719Protein kinase domainDomain
C [auth D],
D [auth E]
IPR003599Immunoglobulin domain subtypeDomain
C [auth D],
D [auth E]
IPR028174Fibroblast growth factor receptor 1, catalytic domainDomain
C [auth D],
D [auth E]
IPR013151Immunoglobulin-like beta-sandwich domainDomain
C [auth D],
D [auth E]
IPR013783Immunoglobulin-like foldHomologous Superfamily
C [auth D],
D [auth E]
IPR007110Immunoglobulin-like domainDomain
C [auth D],
D [auth E]
IPR017441Protein kinase, ATP binding siteBinding Site
C [auth D],
D [auth E]
IPR001245Serine-threonine/tyrosine-protein kinase, catalytic domainDomain
C [auth D],
D [auth E]
IPR016248Fibroblast growth factor receptor familyFamily
C [auth D],
D [auth E]
IPR008266Tyrosine-protein kinase, active siteActive Site
C [auth D],
D [auth E]
IPR003598Immunoglobulin subtype 2Domain
C [auth D],
D [auth E]
IPR013098Immunoglobulin I-setDomain
C [auth D],
D [auth E]
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
C [auth D],
D [auth E]
IPR050122Receptor Tyrosine KinaseFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ9UEF7
PharosQ9GZV9
C [auth D],
D [auth E]
PharosP11362