7Z8F | pdb_00007z8f

Composite structure of dynein-dynactin-BICDR on microtubules


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FA [auth k]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
GA [auth l]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
NA [auth s]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
OA [auth t]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
KSCOP2B SuperfamilySubunits of heterodimeric actin filament capping protein Capz 8077311 3001499 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AActin_1ste7z8fA1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
AActin_2nde7z8fA2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
BActin_1ste7z8fB2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
BActin_2nde7z8fB1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
CActin_1ste7z8fC1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
CActin_2nde7z8fC2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
DActin_1ste7z8fD2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
DActin_2nde7z8fD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
EActin_1ste7z8fE2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
EActin_2nde7z8fE1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
FActin_1ste7z8fF1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
FActin_2nde7z8fF2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
GActin_1ste7z8fG1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
GActin_2nde7z8fG2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
IActin_1ste7z8fI1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
IActin_2nde7z8fI2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
VHexapep_2_1e7z8fV1 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: Hexapep_2_1ECOD (1.6)
PA [auth w]F_UNCLASSIFIEDe7z8fw1 A: alpha bundlesX: YscO-likeH: CT398 helical hairpin (From Topology)T: CT398 helical hairpinF: F_UNCLASSIFIEDECOD (1.6)
QA [auth x]F_UNCLASSIFIEDe7z8fx1 A: alpha bundlesX: YscO-likeH: CT398 helical hairpin (From Topology)T: CT398 helical hairpinF: F_UNCLASSIFIEDECOD (1.6)
WF_UNCLASSIFIEDe7z8fW1 A: alpha bundlesX: YscO-likeH: CT398 helical hairpin (From Topology)T: CT398 helical hairpinF: F_UNCLASSIFIEDECOD (1.6)
BA [auth g]ANAPC4_WD40_7e7z8fg1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_7ECOD (1.6)
CA [auth h]ANAPC4_WD40_7e7z8fh1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_7ECOD (1.6)
JA [auth o]ANAPC4_WD40_7e7z8fo1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_7ECOD (1.6)
KA [auth p]ANAPC4_WD40_7e7z8fp1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_7ECOD (1.6)
DA [auth i]DLICe7z8fi1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DLICECOD (1.6)
LA [auth q]DLICe7z8fq1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DLICECOD (1.6)
MA [auth r]DLICe7z8fr1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DLICECOD (1.6)
FA [auth k]Robl_LC7e7z8fk1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
GA [auth l]Robl_LC7e7z8fl1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
NA [auth s]Robl_LC7e7z8fs1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
OA [auth t]Robl_LC7e7z8ft1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Robl_LC7ECOD (1.6)
HActin_1ste7z8fH2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
HActin_2nde7z8fH1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
JActin_1ste7z8fJ2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
JActin_2nde7z8fJ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
KF-actin_cap_A_1ste7z8fK1 A: alpha bundlesX: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz (From Topology)H: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz (From Topology)T: alpha-helical domain in subunits of heterodimeric actin filament capping protein CapzF: F-actin_cap_A_1stECOD (1.6)
KF-actin_cap_A_3rde7z8fK3 A: a+b two layersX: a+b domain in Capz (From Topology)H: a+b domain in Capz (From Topology)T: a+b domain in CapzF: F-actin_cap_A_3rdECOD (1.6)
KF-actin_cap_A_2nde7z8fK2 A: few secondary structure elementsX: beta-barrel domain in Capz (From Topology)H: beta-barrel domain in Capz (From Topology)T: beta-barrel domain in CapzF: F-actin_cap_A_2ndECOD (1.6)
LF_actin_cap_B_1ste7z8fL1 A: alpha bundlesX: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz (From Topology)H: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz (From Topology)T: alpha-helical domain in subunits of heterodimeric actin filament capping protein CapzF: F_actin_cap_B_1stECOD (1.6)
LF_actin_cap_B_3rde7z8fL3 A: a+b two layersX: a+b domain in Capz (From Topology)H: a+b domain in Capz (From Topology)T: a+b domain in CapzF: F_actin_cap_B_3rdECOD (1.6)
LF_actin_cap_B_2nde7z8fL2 A: few secondary structure elementsX: beta-barrel domain in Capz (From Topology)H: beta-barrel domain in Capz (From Topology)T: beta-barrel domain in CapzF: F_actin_cap_B_2ndECOD (1.6)
UHexapep_2_1e7z8fU1 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: Hexapep_2_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF08385Dynein heavy chain, N-terminal region 1 (DHC_N1)Dynein heavy chain, N-terminal region 1- Family
A, B, C, D, E
PF00022Actin (Actin)Actin- Family
PF21711Dynactin subunit 5 (DCTN5)Dynactin subunit 5- Repeat
PF05502Dynactin p62 family (Dynactin_p62)Dynactin p62 family- Family
PF01267F-actin capping protein alpha subunit (F-actin_cap_A)F-actin capping protein alpha subunit- Family
PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain
PF01115F-actin capping protein, beta subunit (F_actin_cap_B)F-actin capping protein, beta subunit- Family
PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain
M, N, P, Q
PF04912Dynamitin (Dynamitin)Dynamitin- Family
M, N, P, Q
PF08385Dynein heavy chain, N-terminal region 1 (DHC_N1)Dynein heavy chain, N-terminal region 1- Family
O, R
PF07426Dynactin subunit p22 (Dynactin_p22)Dynactin subunit p22- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
ARP1 actin related protein 1 homolog A -
Dynactin subunit 5-
PA [auth w],
QA [auth x],
W,
X
BICD family-like cargo adapter 1
Dynactin subunit 4- -
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
Cytoplasmic dynein 1 heavy chain 1
BA [auth g],
CA [auth h],
JA [auth o],
KA [auth p]
Cytoplasmic dynein 1 intermediate chain 2
DA [auth i],
EA [auth j],
LA [auth q],
MA [auth r]
Cytoplasmic dynein 1 light intermediate chain 2
FA [auth k],
GA [auth l],
NA [auth s],
OA [auth t]
Dynein light chain roadblock-type 1
Actin, cytoplasmic 1
Arp11-
Capping protein (Actin filament) muscle Z-line, alpha 1
F-actin capping protein beta subunit
M, N, P, Q
Dynactin subunit 2-
O, R
Dynactin subunit 3-
S, T
Dynactin subunit 1
Dynactin 6

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR020902Actin/actin-like conserved siteConserved Site
A, B, C, D, E
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
A, B, C, D, E
IPR004000Actin familyFamily
IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
IPR047125Dynactin subunit 5Family
PA [auth w],
QA [auth x],
W,
X
IPR051149Spindly/BICDR Dynein Motor AdapterFamily
IPR008603Dynactin subunit 4Family
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR026983Dynein heavy chainFamily
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR013602Dynein heavy chain, linkerDomain
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR041658Dynein heavy chain AAA lid domainDomain
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR041228Dynein heavy chain, C-terminal domainDomain
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR054354Dynein 2 heavy chain 1, cytoplasmic, ATPase lid domainDomain
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR003593AAA+ ATPase domainDomain
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR041466Dynein heavy chain, AAA 5 extension domainDomain
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR042219Dynein heavy chain AAA lid domain superfamilyHomologous Superfamily
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR024743Dynein heavy chain, coiled coil stalkDomain
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR013594Dynein heavy chain, tailDomain
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR004273Dynein heavy chain region D6 P-loop domainDomain
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
IPR024317Dynein heavy chain, AAA module D4Domain
BA [auth g],
CA [auth h],
JA [auth o],
KA [auth p]
IPR025956Cytoplasmic dynein 1 intermediate chain 1/2Family
BA [auth g],
CA [auth h],
JA [auth o],
KA [auth p]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BA [auth g],
CA [auth h],
JA [auth o],
KA [auth p]
IPR001680WD40 repeatRepeat
BA [auth g],
CA [auth h],
JA [auth o],
KA [auth p]
IPR050687Dynein Intermediate ChainFamily
BA [auth g],
CA [auth h],
JA [auth o],
KA [auth p]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
DA [auth i],
EA [auth j],
LA [auth q],
MA [auth r]
IPR022780Dynein family light intermediate chainFamily
DA [auth i],
EA [auth j],
LA [auth q],
MA [auth r]
IPR008467Dynein 1 light intermediate chainFamily
DA [auth i],
EA [auth j],
LA [auth q],
MA [auth r]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
FA [auth k],
GA [auth l],
NA [auth s],
OA [auth t]
IPR016561Dynein light chain roadblock-type 1/2Family
FA [auth k],
GA [auth l],
NA [auth s],
OA [auth t]
IPR004942Roadblock/LAMTOR2 domainDomain
IPR020902Actin/actin-like conserved siteConserved Site
IPR004001Actin, conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
IPR002189F-actin-capping protein subunit alphaFamily
IPR042489F-actin capping protein, alpha subunit, domain 1Homologous Superfamily
IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
IPR017865F-actin capping protein, alpha subunit, conserved siteConserved Site
IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
IPR019771F-actin capping protein, beta subunit, conserved siteConserved Site
IPR001698F-actin-capping protein subunit betaFamily
IPR043175F-actin-capping protein subunit beta, N-terminal domainHomologous Superfamily
IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
M, N, P, Q
IPR028133DynamitinFamily
O, R
IPR009991Dynactin subunit 3Family
S, T
IPR000938CAP Gly-rich domainDomain
S, T
IPR036859CAP Gly-rich domain superfamilyHomologous Superfamily
S, T
IPR022157Dynein associated proteinDomain
IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
IPR027777Dynactin subunit 6Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
AA [auth f],
HA [auth m],
IA [auth n],
Z [auth e]
PharosQ14204
BA [auth g],
CA [auth h],
JA [auth o],
KA [auth p]
PharosQ13409
DA [auth i],
EA [auth j],
LA [auth q],
MA [auth r]
PharosO43237
FA [auth k],
GA [auth l],
NA [auth s],
OA [auth t]
PharosQ9NP97