8B7Y | pdb_00008b7y

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth L]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
H [auth S]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
K [auth V]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
L [auth W]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
N [auth Y]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
O [auth Z]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
R [auth c]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
V [auth g]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
Y [auth j]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
AA [auth l]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
BA [auth m]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
MA [auth o]SCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)
QA [auth s]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
I [auth T]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
G [auth R]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
F [auth O]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
F [auth O]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
XA [auth 5]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
E [auth M]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
VA [auth x]SCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
TA [auth v]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
SA [auth u]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
RA [auth t]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
PA [auth r]SCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
OA [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
NA [auth p]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
LA [auth Q]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)
KA [auth P]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
JA [auth N]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)
IA [auth H]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
GA [auth F]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
EA [auth D]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)
C [auth K]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
C [auth K]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
X [auth i]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
W [auth h]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
U [auth f]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
T [auth e]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
S [auth d]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
Q [auth b]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
P [auth a]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
M [auth X]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
J [auth U]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth L]Ribosomal_L3e8b7yL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
H [auth S]Ribosomal_L14e8b7yS1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
K [auth V]Ribosomal_L17_1e8b7yV1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
L [auth W]Ribosomal_L18pe8b7yW1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
N [auth Y]Ribosomal_L20e8b7yY1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
O [auth Z]Ribosomal_L21pe8b7yZ1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
R [auth c]ribosomal_L24_1e8b7yc1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
V [auth g]Ribosomal_L29e8b7yg1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
Y [auth j]Ribosomal_L33e8b7yj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
AA [auth l]Ribosomal_L35pe8b7yl1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
BA [auth m]Ribosomal_L36e8b7ym1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
MA [auth o]Ribosomal_S10e8b7yo1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
QA [auth s]Ribosomal_S14_1e8b7ys1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
I [auth T]Ribosomal_L27Ae8b7yT1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
G [auth R]Ribosomal_L13e8b7yR1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
F [auth O]Ribosomal_L6e8b7yO2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
F [auth O]Ribosomal_L6_1e8b7yO1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
XA [auth 5]Ribosomal_S21e8b7y51 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21ECOD (1.6)
E [auth M]Ribosomal_L4e8b7yM1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
WA [auth y]Ribosomal_S20pe8b7yy1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
VA [auth x]Ribosomal_S19e8b7yx1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
UA [auth w]Ribosomal_S18e8b7yw1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
TA [auth v]Ribosomal_S17_1e8b7yv1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
SA [auth u]Ribosomal_S16e8b7yu1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
RA [auth t]Ribosomal_S15_1e8b7yt1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
PA [auth r]Ribosomal_S13_1e8b7yr1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
OA [auth q]Ribosom_S12_S23e8b7yq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
NA [auth p]Ribosomal_S11e8b7yp1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
LA [auth Q]Ribosomal_S9e8b7yQ1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
KA [auth P]Ribosomal_S8_Ne8b7yP2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
KA [auth P]Ribosomal_S8_Ce8b7yP1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
JA [auth N]Ribosomal_S7_1e8b7yN1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
IA [auth H]Ribosomal_S6e8b7yH1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
HA [auth G]Ribosomal_S5_Ce8b7yG2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
HA [auth G]Ribosomal_S5e8b7yG1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
GA [auth F]S4e8b7yF1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
FA [auth E]Ribosomal_S3_Ce8b7yE2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
FA [auth E]KH_2_1e8b7yE1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
EA [auth D]Ribosomal_S2e8b7yD1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
C [auth K]Ribosomal_L2_1e8b7yK2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
C [auth K]Ribosomal_L2_Ce8b7yK1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
Z [auth k]Ribosomal_L34e8b7yk1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
X [auth i]Ribosomal_L32pe8b7yi1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
W [auth h]Ribosomal_L30e8b7yh1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
U [auth f]Ribosomal_L28e8b7yf1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
T [auth e]Ribosomal_L27e8b7ye1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
S [auth d]Ribosomal_L25pe8b7yd1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
Q [auth b]Ribosomal_L23_2e8b7yb1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
P [auth a]Ribosomal_L22e8b7ya1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
M [auth X]Ribosomal_L19e8b7yX1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
J [auth U]Ribosomal_L16e8b7yU1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth L]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
D [auth L]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
H [auth S]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
H [auth S]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
K [auth V]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
K [auth V]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
L [auth W]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
N [auth Y]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
N [auth Y]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
O [auth Z]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
DA [auth C]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
DA [auth C]PF00467KOW motif (KOW)KOW motif- Family
I [auth T]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
I [auth T]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
G [auth R]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
G [auth R]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
F [auth O]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
F [auth O]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
XA [auth 5]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
E [auth M]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
E [auth M]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
LA [auth Q]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
LA [auth Q]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
KA [auth P]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
KA [auth P]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
IA [auth H]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
IA [auth H]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
HA [auth G]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
HA [auth G]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
HA [auth G]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
GA [auth F]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
GA [auth F]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
GA [auth F]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
FA [auth E]PF07650KH domain (KH_2)KH domainDomain
FA [auth E]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
EA [auth D]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
EA [auth D]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
C [auth K]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
C [auth K]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
C [auth K]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
B [auth J]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
M [auth X]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
M [auth X]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
J [auth U]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
J [auth U]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
A [auth I]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth L]50S ribosomal protein L3
H [auth S]50S ribosomal protein L14
K [auth V]50S ribosomal protein L17
L [auth W]50S ribosomal protein L18
N [auth Y]50S ribosomal protein L20
O [auth Z]50S ribosomal protein L21
R [auth c]50S ribosomal protein L24
V [auth g]50S ribosomal protein L29
Y [auth j]50S ribosomal protein L33
AA [auth l]50S ribosomal protein L35
BA [auth m]50S ribosomal protein L36
DA [auth C]16S ribosomal RNA---
MA [auth o]30S ribosomal protein S10
QA [auth s]30S ribosomal protein S14
YA [auth 6]messenger RNA---
ZA [auth z]Myxovalargin B---
I [auth T]50S ribosomal protein L15
G [auth R]50S ribosomal protein L13
F [auth O]50S ribosomal protein L6
XA [auth 5]30S ribosomal protein S21
E [auth M]50S ribosomal protein L4
WA [auth y]30S ribosomal protein S20
VA [auth x]30S ribosomal protein S19
UA [auth w]30S ribosomal protein S18
TA [auth v]30S ribosomal protein S17
SA [auth u]30S ribosomal protein S16
RA [auth t]30S ribosomal protein S15
PA [auth r]30S ribosomal protein S13
OA [auth q]30S ribosomal protein S12
NA [auth p]30S ribosomal protein S11
LA [auth Q]30S ribosomal protein S9
KA [auth P]30S ribosomal protein S8
JA [auth N]30S ribosomal protein S7
IA [auth H]30S ribosomal protein S6
HA [auth G]30S ribosomal protein S5
GA [auth F]30S ribosomal protein S4
FA [auth E]30S ribosomal protein S3
EA [auth D]30S ribosomal protein S2
C [auth K]50S ribosomal protein L2
CA [auth n]P-tRNA fMet---
Z [auth k]50S ribosomal protein L34
X [auth i]50S ribosomal protein L32
W [auth h]50S ribosomal protein L30
U [auth f]50S ribosomal protein L28
T [auth e]50S ribosomal protein L27
B [auth J]5S ribosomal RNA---
S [auth d]50S ribosomal protein L25
Q [auth b]50S ribosomal protein L23
P [auth a]50S ribosomal protein L22
M [auth X]50S ribosomal protein L19
J [auth U]50S ribosomal protein L16
A [auth I]23S ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth L]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
D [auth L]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
D [auth L]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth L]IPR000597Large ribosomal subunit protein uL3Family
H [auth S]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
H [auth S]IPR000218Large ribosomal subunit protein uL14Family
H [auth S]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
H [auth S]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
K [auth V]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
K [auth V]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
K [auth V]IPR000456Large ribosomal subunit protein bL17Family
L [auth W]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
L [auth W]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
N [auth Y]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
N [auth Y]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
N [auth Y]IPR005813Large ribosomal subunit protein bL20Family
O [auth Z]IPR028909Large ribosomal subunit protein bL21-likeFamily
O [auth Z]IPR001787Large ribosomal subunit protein bL21Family
O [auth Z]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
O [auth Z]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
R [auth c]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth c]IPR003256Large ribosomal subunit protein uL24Family
R [auth c]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
R [auth c]IPR005824KOWDomain
R [auth c]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
V [auth g]IPR050063Universal ribosomal protein uL29Family
V [auth g]IPR001854Large ribosomal subunit protein uL29Family
V [auth g]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
V [auth g]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
Y [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth j]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
Y [auth j]IPR001705Large ribosomal subunit protein bL33Family
Y [auth j]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
AA [auth l]IPR021137Large ribosomal subunit protein bL35-likeFamily
AA [auth l]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
AA [auth l]IPR001706Large ribosomal subunit protein bL35Family
AA [auth l]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
BA [auth m]IPR000473Large ribosomal subunit protein bL36Family
BA [auth m]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
MA [auth o]IPR027486Small ribosomal subunit protein uS10 domainDomain
MA [auth o]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
MA [auth o]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
MA [auth o]IPR001848Small ribosomal subunit protein uS10Family
QA [auth s]IPR001209Small ribosomal subunit protein uS14Family
QA [auth s]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
QA [auth s]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
I [auth T]IPR021131Large ribosomal subunit protein uL15/eL18Domain
I [auth T]IPR030878Large ribosomal subunit protein uL15Family
I [auth T]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
I [auth T]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
I [auth T]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
G [auth R]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
G [auth R]IPR005822Large ribosomal subunit protein uL13Family
G [auth R]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
G [auth R]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
F [auth O]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
F [auth O]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
F [auth O]IPR000702Large ribosomal subunit protein uL6-likeFamily
F [auth O]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
F [auth O]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
XA [auth 5]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
XA [auth 5]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
XA [auth 5]IPR001911Small ribosomal subunit protein bS21Family
E [auth M]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth M]IPR002136Large ribosomal subunit protein uL4Family
E [auth M]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
WA [auth y]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
WA [auth y]IPR002583Small ribosomal subunit protein bS20Family
VA [auth x]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
VA [auth x]IPR002222Small ribosomal subunit protein uS19Family
VA [auth x]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
VA [auth x]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
UA [auth w]IPR001648Small ribosomal subunit protein bS18Family
UA [auth w]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
UA [auth w]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
TA [auth v]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
TA [auth v]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
TA [auth v]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
TA [auth v]IPR000266Small ribosomal subunit protein uS17Family
SA [auth u]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
SA [auth u]IPR000307Small ribosomal subunit protein bS16Family
SA [auth u]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
RA [auth t]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
RA [auth t]IPR000589Small ribosomal subunit protein uS15Family
RA [auth t]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
PA [auth r]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
PA [auth r]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
PA [auth r]IPR001892Small ribosomal subunit protein uS13Family
PA [auth r]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
PA [auth r]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
OA [auth q]IPR005679Ribosomal protein uS12, bacteriaFamily
OA [auth q]IPR006032Small ribosomal subunit protein uS12Family
OA [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
NA [auth p]IPR001971Small ribosomal subunit protein uS11Family
NA [auth p]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
NA [auth p]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
NA [auth p]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
LA [auth Q]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
LA [auth Q]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
LA [auth Q]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
LA [auth Q]IPR000754Small ribosomal subunit protein uS9Family
LA [auth Q]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
KA [auth P]IPR000630Small ribosomal subunit protein uS8Family
KA [auth P]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
KA [auth P]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
JA [auth N]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
JA [auth N]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
JA [auth N]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
JA [auth N]IPR000235Small ribosomal subunit protein uS7Family
JA [auth N]IPR023798Small ribosomal subunit protein uS7 domainDomain
IA [auth H]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
IA [auth H]IPR000529Small ribosomal subunit protein bS6Family
IA [auth H]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
IA [auth H]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
IA [auth H]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
HA [auth G]IPR000851Small ribosomal subunit protein uS5Family
HA [auth G]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
HA [auth G]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
HA [auth G]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
HA [auth G]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
HA [auth G]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
HA [auth G]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
GA [auth F]IPR002942RNA-binding S4 domainDomain
GA [auth F]IPR022801Small ribosomal subunit protein uS4Family
GA [auth F]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
GA [auth F]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
GA [auth F]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
GA [auth F]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
FA [auth E]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
FA [auth E]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
FA [auth E]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
FA [auth E]IPR004087K Homology domainDomain
FA [auth E]IPR004044K Homology domain, type 2Domain
FA [auth E]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
FA [auth E]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
FA [auth E]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
EA [auth D]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
EA [auth D]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
EA [auth D]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
EA [auth D]IPR001865Small ribosomal subunit protein uS2Family
C [auth K]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
C [auth K]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth K]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth K]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth K]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth K]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth K]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth K]IPR002171Large ribosomal subunit protein uL2Family
Z [auth k]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
Z [auth k]IPR000271Large ribosomal subunit protein bL34Family
X [auth i]IPR002677Large ribosomal subunit protein bL32Family
X [auth i]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
X [auth i]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
W [auth h]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
W [auth h]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
W [auth h]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
W [auth h]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
U [auth f]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
U [auth f]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
U [auth f]IPR026569Large ribosomal subunit protein bL28Family
U [auth f]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
T [auth e]IPR001684Large ribosomal subunit protein bL27Family
T [auth e]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
S [auth d]IPR020055Ribosomal protein bL25, short-formFamily
S [auth d]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
S [auth d]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
S [auth d]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
S [auth d]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
Q [auth b]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth b]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Q [auth b]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
Q [auth b]IPR013025Large ribosomal subunit protein uL23-likeFamily
P [auth a]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
P [auth a]IPR001063Large ribosomal subunit protein uL22Family
P [auth a]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
P [auth a]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
P [auth a]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
M [auth X]IPR001857Large ribosomal subunit protein bL19Family
M [auth X]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
M [auth X]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
M [auth X]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth U]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
J [auth U]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
J [auth U]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
J [auth U]IPR016180Large ribosomal subunit protein uL16 domainDomain
J [auth U]IPR047873Large ribosomal subunit protein uL16Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
ZA [auth z]AG2
ZA [auth z]ALQ
ZA [auth z]DAL RESIDAA0111 , AA0191

PSI-MOD :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862
ZA [auth z]DAR RESIDAA0111 , AA0191

ZA [auth z]DHV RESIDAA0111 , AA0191

ZA [auth z]DVA RESIDAA0111 , AA0191 , AA0200

PSI-MOD :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , D-valine MOD:00705
ZA [auth z]IB9 Parent Component: TYR

RESIDAA0111 , AA0191 , AA0200

ZA [auth z]MAA Parent Component: ALA

RESIDAA0111 , AA0191 , AA0200 , AA0061

PSI-MOD :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , D-valine MOD:00705 , N-methyl-L-alanine MOD:00070
ZA [auth z]RX9 Parent Component: ILE

RESIDAA0111 , AA0191 , AA0200 , AA0061

ZA [auth z]RXL Parent Component: VAL

RESIDAA0111 , AA0191 , AA0200 , AA0061

A [auth I]1MG Parent Component: G

RESIDAA0111 , AA0191 , AA0200 , AA0061

A [auth I]2MA Parent Component: A

RESIDAA0111 , AA0191 , AA0200 , AA0061

A [auth I]2MG Parent Component: G

RESIDAA0111 , AA0191 , AA0200 , AA0061

A [auth I]5MC Parent Component: C

RESIDAA0111 , AA0191 , AA0200 , AA0061

A [auth I]5MU Parent Component: U

RESIDAA0111 , AA0191 , AA0200 , AA0061

A [auth I]OMC Parent Component: C

RESIDAA0111 , AA0191 , AA0200 , AA0061

A [auth I]OMG Parent Component: G

RESIDAA0111 , AA0191 , AA0200 , AA0061

A [auth I]OMU Parent Component: U

RESIDAA0111 , AA0191 , AA0200 , AA0061

A [auth I]PSU Parent Component: U

RESIDAA0111 , AA0191 , AA0200 , AA0061