8DCR | pdb_00008dcr

Cryo-EM structure of dobutamine-bound beta1-adrenergic receptor in complex with heterotrimeric Gs-protein

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2B SuperfamilyWD40 repeat-like 8042849 3001694 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyRas-like P-loop GTPases 8056791 3002022 SCOP2B (2022-06-29)
D [auth G]SCOP2B SuperfamilyTransducin (heterotrimeric G protein), gamma chain 8070796 3001771 SCOP2B (2022-06-29)
E [auth R]SCOP2B SuperfamilyG protein-coupled receptor-like 8091152 3000473 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]ANAPC4_WD40_3e8dcrB1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_3ECOD (1.6)
B [auth N]V-set_12e8dcrN1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)
C [auth A]Rase8dcrA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
D [auth G]G-gammae8dcrG1 A: extended segmentsX: Transducin (heterotrimeric G protein), gamma chain (From Topology)H: Transducin (heterotrimeric G protein), gamma chain (From Topology)T: Transducin (heterotrimeric G protein), gamma chainF: G-gammaECOD (1.6)
E [auth R]7tm_1_3e8dcrR1 A: alpha bundlesX: Family A G protein-coupled receptor-like (From Topology)H: Family A G protein-coupled receptor-like (From Topology)T: Family A G protein-coupled receptor-likeF: 7tm_1_3ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth B]2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (utative)
B [auth N]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth N]Heavy ChainIGHV3 -guanine nucleotide-binding protein g(s) subunit alphaisoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 SAbDab (2025-09-05)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
C [auth A]PF00503G-protein alpha subunit (G-alpha)G-protein alpha subunitG proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ...G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
Domain
E [auth R]PF000017 transmembrane receptor (rhodopsin family) (7tm_1)7 transmembrane receptor (rhodopsin family)This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ...This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B]Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
B [auth N]Nanobody 35---
C [auth A]Guanine nucleotide-binding protein G(s) subunit alpha isoforms short
D [auth G]Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
E [auth R]Endolysin,Endolysin,Beta-1 adrenergic receptor chimera

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B]IPR016346G-protein subunit beta 1-5Family
A [auth B]IPR019775WD40 repeat, conserved siteConserved Site
A [auth B]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
A [auth B]IPR001632G-protein beta subunit, WD40 repeatsDomain
A [auth B]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
A [auth B]IPR001680WD40 repeatRepeat
A [auth B]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
C [auth A]IPR001019Guanine nucleotide binding protein (G-protein), alpha subunitFamily
C [auth A]IPR000367G-protein alpha subunit, group SFamily
C [auth A]IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
C [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth G]IPR015898G-protein, gamma subunit-like domainDomain
D [auth G]IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily
D [auth G]IPR001770G-protein, gamma subunitFamily
E [auth R]IPR052619Bacteriophage lysozyme-likeFamily
E [auth R]IPR001165T4-type lysozymeFamily
E [auth R]IPR034690Endolysin T4 typeFamily
E [auth R]IPR002196Glycoside hydrolase, family 24Family
E [auth R]IPR023347Lysozyme domain superfamilyHomologous Superfamily
E [auth R]IPR023346Lysozyme-like domain superfamilyHomologous Superfamily
E [auth R]IPR000276G protein-coupled receptor, rhodopsin-likeFamily
E [auth R]IPR002233Adrenoceptor familyFamily
E [auth R]IPR017452GPCR, rhodopsin-like, 7TMDomain
E [auth R]IPR000507Beta 1 adrenoceptorFamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM