8PTK | pdb_00008ptk

Composite structure of Dynein-Dynactin-JIP3-LIS1

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 1]SCOP2B SuperfamilyWD40 repeat-like 8103390 3001694 SCOP2B (2022-06-29)
B [auth 2]SCOP2B SuperfamilyWD40 repeat-like 8103390 3001694 SCOP2B (2022-06-29)
C [auth 3]SCOP2B SuperfamilyWD40 repeat-like 8103390 3001694 SCOP2B (2022-06-29)
D [auth 4]SCOP2B SuperfamilyWD40 repeat-like 8103390 3001694 SCOP2B (2022-06-29)
AA [auth X]SCOP2B SuperfamilyLeucine zipper-like 8083005 3001609 SCOP2B (2022-06-29)
YA [auth x]SCOP2B SuperfamilyLeucine zipper-like 8083005 3001609 SCOP2B (2022-06-29)
CA [auth a]SCOP2B SuperfamilyDLC-like 8034979 3000821 SCOP2B (2022-06-29)
DA [auth b]SCOP2B SuperfamilyDLC-like 8034979 3000821 SCOP2B (2022-06-29)
EA [auth d]SCOP2B SuperfamilyDLC-like 8034979 3000821 SCOP2B (2022-06-29)
JA [auth i]SCOP2B SuperfamilyDLC-like 8034979 3000821 SCOP2B (2022-06-29)
HA [auth g]SCOP2B SuperfamilyDynein intermediate chain-like 8051842 3002038 SCOP2B (2022-06-29)
IA [auth h]SCOP2B SuperfamilyDynein intermediate chain-like 8051842 3002038 SCOP2B (2022-06-29)
PA [auth o]SCOP2B SuperfamilyDynein intermediate chain-like 8051842 3002038 SCOP2B (2022-06-29)
QA [auth p]SCOP2B SuperfamilyDynein intermediate chain-like 8051842 3002038 SCOP2B (2022-06-29)
LA [auth k]SCOP2B SuperfamilyDLC-like 8051841 3000821 SCOP2B (2022-06-29)
MA [auth l]SCOP2B SuperfamilyDLC-like 8051841 3000821 SCOP2B (2022-06-29)
WA [auth v]SCOP2B SuperfamilyDLC-like 8051841 3000821 SCOP2B (2022-06-29)
ZA [auth y]SCOP2B SuperfamilyDLC-like 8051841 3000821 SCOP2B (2022-06-29)
AB [auth z]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
TA [auth s]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
UA [auth t]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
XA [auth w]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
O [auth K]SCOP2B SuperfamilySubunits of heterodimeric actin filament capping protein Capz 8077311 3001499 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		PF08513LisH (LisH)LisHThe LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps medi ...The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex [1].
Domain
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Y [auth U]PF05783Dynein light intermediate chain (DLIC) (DLIC)Dynein light intermediate chain (DLIC)- Family
Z [auth W]PF21711Dynactin subunit 5 (DCTN5)Dynactin subunit 5- Repeat
Z [auth W]PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain
AA [auth X],
YA [auth x]		PF16471JNK-interacting protein leucine zipper II (JIP_LZII)JNK-interacting protein leucine zipper II- Coiled-coil
AA [auth X],
YA [auth x]		PF09744RILP homology 1 domain (RH1)RILP homology 1 domainThis is the RILP homology 1 (RH1) protein-protein interaction domain found at the N-terminal of Rab36-binding proteins including Rab interacting lysosomal proteins (RILP), RILP1/2 NK-interacting protein 3 (JIP3) and NK-interacting protein 4 (JIP4). T ...This is the RILP homology 1 (RH1) protein-protein interaction domain found at the N-terminal of Rab36-binding proteins including Rab interacting lysosomal proteins (RILP), RILP1/2 NK-interacting protein 3 (JIP3) and NK-interacting protein 4 (JIP4). This domain binds to the myosin Va globular tail domain (MyoVa-GTD) [1].
Domain
BA [auth Y]PF03645Tctex-1 family (Tctex-1)Tctex-1 family- Family
BA [auth Y]PF05502Dynactin p62 family (Dynactin_p62)Dynactin p62 family- Family
PF08385Dynein heavy chain, N-terminal region 1 (DHC_N1)Dynein heavy chain, N-terminal region 1- Family
PF00022Actin (Actin)Actin- Family
PF01221Dynein light chain type 1 (Dynein_light)Dynein light chain type 1Domain
O [auth K]PF03645Tctex-1 family (Tctex-1)Tctex-1 family- Family
O [auth K]PF01267F-actin capping protein alpha subunit (F-actin_cap_A)F-actin capping protein alpha subunit- Family
P [auth L]PF03645Tctex-1 family (Tctex-1)Tctex-1 family- Family
P [auth L]PF01115F-actin capping protein, beta subunit (F_actin_cap_B)F-actin capping protein, beta subunit- Family
Q [auth M],
R [auth N],
T [auth P],
U [auth Q]		PF04912Dynamitin (Dynamitin)Dynamitin- Family
Q [auth M],
R [auth N],
T [auth P],
U [auth Q]		PF05783Dynein light intermediate chain (DLIC) (DLIC)Dynein light intermediate chain (DLIC)- Family
Q [auth M],
R [auth N],
T [auth P],
U [auth Q]		PF08385Dynein heavy chain, N-terminal region 1 (DHC_N1)Dynein heavy chain, N-terminal region 1- Family
S [auth O],
V [auth R]		PF05783Dynein light intermediate chain (DLIC) (DLIC)Dynein light intermediate chain (DLIC)- Family
S [auth O],
V [auth R]		PF07426Dynactin subunit p22 (Dynactin_p22)Dynactin subunit p22- Family
W [auth S],
X [auth T]		PF12455Dynein associated protein (Dynactin)Dynein associated protein- Family
W [auth S],
X [auth T]		PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		Platelet-activating factor acetylhydrolase IB subunit beta
Y [auth U]Dynactin 6
Z [auth W]Dynactin subunit 5-
AA [auth X],
YA [auth x]		C-Jun-amino-terminal kinase-interacting protein 3
BA [auth Y]Dynactin subunit 4- -
CA [auth a],
DA [auth b],
EA [auth d],
JA [auth i]		Dynein light chain 1, cytoplasmic
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		Cytoplasmic dynein 1 heavy chain 1
HA [auth g],
IA [auth h],
PA [auth o],
QA [auth p]		Cytoplasmic dynein 1 intermediate chain 2
KA [auth j],
RA [auth q],
SA [auth r],
VA [auth u]		Cytoplasmic dynein 1 light intermediate chain 2
LA [auth k],
MA [auth l],
WA [auth v],
ZA [auth y]		Dynein light chain Tctex-type 1
AB [auth z],
TA [auth s],
UA [auth t],
XA [auth w]		Dynein light chain roadblock-type 1
ARP1 actin related protein 1 homolog A -
L [auth H]Actin, cytoplasmic 1
N [auth J]Arp11-
O [auth K]Capping protein (Actin filament) muscle Z-line, alpha 1
P [auth L]F-actin-capping protein subunit beta
Q [auth M],
R [auth N],
T [auth P],
U [auth Q]		Dynactin subunit 2-
S [auth O],
V [auth R]		Dynactin subunit 3-
W [auth S],
X [auth T]		Dynactin subunit 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		IPR019775WD40 repeat, conserved siteConserved Site
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		IPR006594LIS1 homology motifConserved Site
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		IPR037190LIS1, N-terminalHomologous Superfamily
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		IPR050349WD repeat LIS1/nudF dynein regulationFamily
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		IPR056795PAC1-like, LisH-like dimerisation domainDomain
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		IPR001680WD40 repeatRepeat
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		IPR017252Dynein regulator LIS1Family
Y [auth U]IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
Y [auth U]IPR027777Dynactin subunit 6Family
Z [auth W]IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
Z [auth W]IPR047125Dynactin subunit 5Family
AA [auth X],
YA [auth x]		IPR034743RH1 domainDomain
AA [auth X],
YA [auth x]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth X],
YA [auth x]		IPR034744RH2 domainDomain
AA [auth X],
YA [auth x]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth X],
YA [auth x]		IPR039911JNK-interacting protein 3/4Family
AA [auth X],
YA [auth x]		IPR032486JNK-interacting protein, leucine zipper IIDomain
BA [auth Y]IPR008603Dynactin subunit 4Family
CA [auth a],
DA [auth b],
EA [auth d],
JA [auth i]		IPR037177Dynein light chain superfamilyHomologous Superfamily
CA [auth a],
DA [auth b],
EA [auth d],
JA [auth i]		IPR019763Dynein light chain, type 1/2, conserved siteConserved Site
CA [auth a],
DA [auth b],
EA [auth d],
JA [auth i]		IPR001372Dynein light chain, type 1/2Family
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR026983Dynein heavy chainFamily
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR013602Dynein heavy chain, linkerDomain
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR041658Dynein heavy chain AAA lid domainDomain
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR041228Dynein heavy chain, C-terminal domainDomain
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR054354Dynein 2 heavy chain 1, cytoplasmic, ATPase lid domainDomain
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR003593AAA+ ATPase domainDomain
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR041466Dynein heavy chain, AAA 5 extension domainDomain
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR042219Dynein heavy chain AAA lid domain superfamilyHomologous Superfamily
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR024743Dynein heavy chain, coiled coil stalkDomain
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR013594Dynein heavy chain, tailDomain
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR004273Dynein heavy chain region D6 P-loop domainDomain
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		IPR024317Dynein heavy chain, AAA module D4Domain
HA [auth g],
IA [auth h],
PA [auth o],
QA [auth p]		IPR025956Cytoplasmic dynein 1 intermediate chain 1/2Family
HA [auth g],
IA [auth h],
PA [auth o],
QA [auth p]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
HA [auth g],
IA [auth h],
PA [auth o],
QA [auth p]		IPR001680WD40 repeatRepeat
HA [auth g],
IA [auth h],
PA [auth o],
QA [auth p]		IPR050687Dynein Intermediate ChainFamily
HA [auth g],
IA [auth h],
PA [auth o],
QA [auth p]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
KA [auth j],
RA [auth q],
SA [auth r],
VA [auth u]		IPR022780Dynein family light intermediate chainFamily
KA [auth j],
RA [auth q],
SA [auth r],
VA [auth u]		IPR008467Dynein 1 light intermediate chainFamily
KA [auth j],
RA [auth q],
SA [auth r],
VA [auth u]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
LA [auth k],
MA [auth l],
WA [auth v],
ZA [auth y]		IPR038586Tctex-1-like superfamilyHomologous Superfamily
LA [auth k],
MA [auth l],
WA [auth v],
ZA [auth y]		IPR005334Dynein light chain Tctex-1 likeFamily
AB [auth z],
TA [auth s],
UA [auth t],
XA [auth w]		IPR016561Dynein light chain roadblock-type 1/2Family
AB [auth z],
TA [auth s],
UA [auth t],
XA [auth w]		IPR004942Roadblock/LAMTOR2 domainDomain
IPR020902Actin/actin-like conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
L [auth H]IPR020902Actin/actin-like conserved siteConserved Site
L [auth H]IPR004001Actin, conserved siteConserved Site
L [auth H]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
L [auth H]IPR004000Actin familyFamily
N [auth J]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
N [auth J]IPR004000Actin familyFamily
O [auth K]IPR002189F-actin-capping protein subunit alphaFamily
O [auth K]IPR042489F-actin capping protein, alpha subunit, domain 1Homologous Superfamily
O [auth K]IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
O [auth K]IPR017865F-actin capping protein, alpha subunit, conserved siteConserved Site
O [auth K]IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
P [auth L]IPR019771F-actin capping protein, beta subunit, conserved siteConserved Site
P [auth L]IPR001698F-actin-capping protein subunit betaFamily
P [auth L]IPR043175F-actin-capping protein subunit beta, N-terminal domainHomologous Superfamily
P [auth L]IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
P [auth L]IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
Q [auth M],
R [auth N],
T [auth P],
U [auth Q]		IPR028133DynamitinFamily
S [auth O],
V [auth R]		IPR009991Dynactin subunit 3Family
W [auth S],
X [auth T]		IPR000938CAP Gly-rich domainDomain
W [auth S],
X [auth T]		IPR036859CAP Gly-rich domain superfamilyHomologous Superfamily
W [auth S],
X [auth T]		IPR022157Dynein associated proteinDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth 1],
B [auth 2],
C [auth 3],
D [auth 4]		Pharos:  P43034
AA [auth X],
YA [auth x]		Pharos:  Q9UPT6
CA [auth a],
DA [auth b],
EA [auth d],
JA [auth i]		Pharos:  P63167
FA [auth e],
GA [auth f],
NA [auth m],
OA [auth n]		Pharos:  Q14204
HA [auth g],
IA [auth h],
PA [auth o],
QA [auth p]		Pharos:  Q13409
KA [auth j],
RA [auth q],
SA [auth r],
VA [auth u]		Pharos:  O43237
LA [auth k],
MA [auth l],
WA [auth v],
ZA [auth y]		Pharos:  P63172
AB [auth z],
TA [auth s],
UA [auth t],
XA [auth w]		Pharos:  Q9NP97